BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE03FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1639 0.0
>3x_Contig1020
Length = 4879
Score = 1639 bits (827), Expect = 0.0
Identities = 878/890 (98%), Gaps = 4/890 (0%)
Strand = Plus / Minus
Query: 88 tgcaaagcaataccacggtcaacaactggcgtggactctttcaaaattgtcatatcggta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 tgcaaagcaataccacggtcaacaactggcgtggactctttcaaaattgtcatatcggta 2461
Query: 148 tacatggccgcatccatcaaccagaatgccaaggtcttatcaccaaccaaagcctgatca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 tacatggccgcatccatcaaccagaatgccaaggtcttatcaccaaccaaagcctgatca 2401
Query: 208 tgagattccgtatatgcgacaaccttttcacggtgccttctatttaccaaggtgtgaaca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 tgagattccgtatatgcgacaaccttttcacggtgccttctatttaccaaggtgtgaaca 2341
Query: 268 atatgacccatttcccagtcctcgtctctgctttctttcaaaagtttgatccacatatca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 atatgacccatttcccagtcctcgtctctgctttctttcaaaagtttgatccacatatca 2281
Query: 328 ggtaacgccattgctagacggtaatcaaaaccagcgcctcccagatgacgtggcatacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 ggtaacgccattgctagacggtaatcaaaaccagcgcctcccagatgacgtggcatacaa 2221
Query: 388 agagtcggataccctgaaacgtcttctgcaatggtgaatccgttgtctggtaacaattct 447
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2220 agagtcggataccctgaaacgtcttctgcaatggtgattccgttgtctggtaacaattct 2161
Query: 448 ctgacaaggtcattagctaacatcaagtatgccaaggcctcatgatcaacaaaagatctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 ctgacaaggtcattagctaacatcaagtatgccaaggcctcatgatcaacaaaagatctt 2101
Query: 508 tcactagataagtactcattgtaatcaccactgaaggcaccaccttcaccaacaccatga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tcactagataagtactcattgtaatcaccactgaaggcaccaccttcaccaacaccatga 2041
Query: 568 tgcaagtatagcattgatgttacaccatcgaatctgaacccgtcaaattgatacacatca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 tgcaagtatagcattgatgttacaccatcgaatctgaacccgtcaaattgatacacatca 1981
Query: 628 atgtaaaatgctagattagcaagtaggaatctttgtacttcaaaatgcccatagttaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 atgtaaaatgctagattagcaagtaggaatctttgtacttcaaaatgcccatagttaaat 1921
Query: 688 agcctagaatcccataaaggatgttcaccacgagaagatgccaaagaatggaaatattga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 agcctagaatcccataaaggatgttcaccacgagaagatgccaaagaatggaaatattga 1861
Query: 748 tgatcggatccgtcgaattggtttaggccatcagtaacatttttagaagcatgagaaatg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1860 tgatcggatccgtcgaattggtttaggccatcagtaacatttttagaagcatgag-aatg 1802
Query: 808 aaccacatcc-agagcactagaattcccattccatgagcagtatcgaccaactctttcaa 866
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 aaccacatccaagagcactagaattcccattccatgagcagtatcgaccaactctttcaa 1742
Query: 867 ctcgtcaggcgtaccanaacgggaagaagcggcaaagaaattggtcacctggtaaccgaa 926
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 ctcgtcaggcgtaccaaaacgggaagaagcggcaaagaaattggtcacctggtaaccgaa 1682
Query: 927 a-aagcatattatgcgtgtttcattattacccataatttgaatggcatcg 975
| ||||||| |||||||||| || || || |||| | |||||||||||||
Sbjct: 1681 agaagcatagtatgcgtgttcca-taatagccattaattgaatggcatcg 1633
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6119
Number of Sequences: 1807
Number of extensions: 6119
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)