BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE04FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1580 0.0
>3x_Contig1728
Length = 20685
Score = 1580 bits (797), Expect = 0.0
Identities = 847/858 (98%), Gaps = 5/858 (0%)
Strand = Plus / Minus
Query: 88 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13568 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 13509
Query: 148 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13508 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 13449
Query: 208 tatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13448 tatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctct 13389
Query: 268 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13388 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 13329
Query: 328 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13328 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 13269
Query: 388 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13268 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 13209
Query: 448 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13208 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 13149
Query: 508 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 13089
Query: 568 accaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13088 accaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttt 13029
Query: 628 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13028 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctt 12969
Query: 688 tcttaactgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12968 tcttaactgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttgg 12909
Query: 748 acctaccacagtttacgccagctgtctacggtgccattaatcctctgccaattnttaaga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12908 acctaccacagtttacgccagctgtctacggtgccattaatcctctgccaatttttaaga 12849
Query: 808 gcttgttctccgagtttttaccttgat-aatncgacttttttgtatcattggttgataag 866
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||
Sbjct: 12848 gcttgttctccgagtttttacc-tgataaattcgacttttttgtatcattgtttgataag 12790
Query: 867 ggtatgcaaagtccttctcagatca-catatcctttgaaaa-ttgcttaattnatacccg 924
| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||
Sbjct: 12789 gttatgcaaagtccttctcagatcaccatatcctttgaaaatttgcttaatttata-ccg 12731
Query: 925 cataatgggggagtacat 942
|||||| |||||||||||
Sbjct: 12730 cataattggggagtacat 12713
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6537
Number of Sequences: 1807
Number of extensions: 6537
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)