BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE04RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig378 1614 0.0
>3x_Contig378
Length = 1675
Score = 1614 bits (814), Expect = 0.0
Identities = 870/884 (98%), Gaps = 4/884 (0%)
Strand = Plus / Minus
Query: 50 ttcttcttcgagtcttggaatgtttcgtgcagtgtctgataattaggaaaagttccatca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 ttcttcttcgagtcttggaatgtttcgtgcagtgtctgataattaggaaaagttccatca 1541
Query: 110 aacatatctacgatcctgcctcgaatattcttcgcagctgcaccactgatctgctgtgaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 aacatatctacgatcctgcctcgaatattcttcgcagctgcaccactgatctgctgtgaa 1481
Query: 170 atgatgctacctgccaatttattaaaataaaggtccatcgaatccttggccacattttcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atgatgctacctgccaatttattaaaataaaggtccatcgaatccttggccacattttcc 1421
Query: 230 ttgagaaacatggtgaaaggactatgctcaatgatttcttttaatgtggggtcaatagtt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 ttgagaaacatggtgaaaggactatgctcaatgatttcttttaatgtggggtcaatagtt 1361
Query: 290 aagatatgttctattccatcacggaatgaatcaatgtgctgatccagatattcttggtcc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 aagatatgttctattccatcacggaatgaatcaatgtgctgatccagatattcttggtcc 1301
Query: 350 acatccaccttgaggatatcatcccttgtccttttcatttcaatatagccttggcgacac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 acatccaccttgaggatatcatcccttgtccttttcatttcaatatagccttggcgacac 1241
Query: 410 ttttgtccgttctttctttctttactttcgagaagttgttttaaggttctctgacatata 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 ttttgtccgttctttctttctttactttcgagaagttgttttaaggttctctgacatata 1181
Query: 470 agattcctttattaatcaagatcaactttaattatcaattatcactttattcaatggaaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 agattcctttattaatcaagatcaactttaattatcaattatcactttattcaatggaaa 1121
Query: 530 ataaacactaaaactgaaagttaccattactaggcaaccgtatcagagatgaacatcacc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 ataaacactaaaactgaaagttaccattactaggcaaccgtatcagagatgaacatcacc 1061
Query: 590 gtcacttatgagcactctgatgatgtccttggaccttttgaattgagtgaagatatgtcg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 gtcacttatgagcactctgatgatgtccttggaccttttgaattgagtgaagatatgtcg 1001
Query: 650 cttatcgaccttttcgcattgatagactttaaagaggaatctcagatcatatttcacaac 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 cttatcgaccttttcgcattgatagactttaaagaggaatctcagatcatatttcacaac 941
Query: 710 atgaagcaacttgacactaagaacacgaatantactttgaaagaagctggcttacaaaac 769
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 940 atgaagcaacttgacactaagaacacgaatataactttgaaagaggctggcttacaaaac 881
Query: 770 catgatatgcttttgataaaacctaagaattccgctagttcccaggcagcttttcgttca 829
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 880 catgatatgcttttgataaaacctaagaatcccgctagttcccaggcagc-tttcggtca 822
Query: 830 ccctca-gagatcgatttgacggatgaacagtacattgtacagttcagga-ctttcctat 887
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 821 acctcaggagatcgatttgacggatgaacagtacattgaacagttcaggagctttcctat 762
Query: 888 tagagaat-caagtatggctcagnagatgggtctttcaaactta 930
|||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 761 tagagaatccaagtatggctcaagagatgggtcttccaaactta 718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7305
Number of Sequences: 1807
Number of extensions: 7305
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)