BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE06FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1524 0.0
>3x_Contig1757
Length = 24754
Score = 1524 bits (769), Expect = 0.0
Identities = 823/832 (98%), Gaps = 7/832 (0%)
Strand = Plus / Minus
Query: 86 tatcatcattagttagattcagtggcttaaaatataaactgtaaaagtgatttcattcgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15250 tatcatcattagttagattcagtggcttaaaatataaactgtaaaagtgatttcattcgt 15191
Query: 146 atatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctgggatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15190 atatgaggtttttttgaagagttttttaaacattatatggtaccagtaccttctgggatt 15131
Query: 206 attatatcattgtgtagagttcaaccctcaattgacttacttttgaatctaaagacttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15130 attatatcattgtgtagagttcaaccctcaattgacttacttttgaatctaaagacttta 15071
Query: 266 tttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaatacaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15070 tttgctgcgcgactggtttataaggtgtgctaatagagatctccaagacaaaaatacaga 15011
Query: 326 taatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatcaacgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15010 taatgggaattgtgtccgtcgtgcaggatttcttctcgctagagactctagatcaacgtt 14951
Query: 386 tgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattcaatcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14950 tgacggcacctacgaatgattctcgtcgtaaacagaaattggggccagaaattcaatcta 14891
Query: 446 gatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctaccgttga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14890 gatggtcgtcattagaattcaaggcttattggttaatcttgtgtatagtgctaccgttga 14831
Query: 506 tgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagtaccagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14830 tgcttaaggcaggaatggatgctactaactcatggaattcaaactattacaagtaccagc 14771
Query: 566 atttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgcccagtata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14770 atttgttgagtaagggatggatgttcggaagaaaagttgataacagcgatgcccagtata 14711
Query: 626 gattttttagagataatctattgttactggtgggtctgatggtacttcatttatctatca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14710 gattttttagagataatctattgttactggtgggtctgatggtacttcatttatctatca 14651
Query: 686 agaaagctgtgctccaatttaccaatgtacaaaaggtgacgtttgatttttggtttgggt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14650 agaaagctgtgctccaatttaccaatgtacaaaaggtgacgtttgatttttggtttgggt 14591
Query: 746 tagttttcttaattggtgcacatggcgtaaactgcttgcgcgttttgttccatgttctag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14590 tagttttcttaattggtgcacatggcgtaaactgcttgcgcgttttgttccatgttctag 14531
Query: 806 t-atgttcacccta-ccaagacatttaaga-gcanagagc-ttggcaactttgagtgtgt 861
| |||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 14530 taatgttcaccctagccaagacatttaagaggcaaagagcattggcaactttgagtgtgt 14471
Query: 862 ggatatatggta-tggcttccttttca-taacaattcctata-aaacttaca 910
|||||||||||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct: 14470 ggatatatggtattggctcccttttcattaacaattcctatagaaacttaca 14419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6198
Number of Sequences: 1807
Number of extensions: 6198
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)