BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE07FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 1532 0.0
>3x_Contig1452
Length = 10057
Score = 1532 bits (773), Expect = 0.0
Identities = 843/853 (98%), Gaps = 10/853 (1%)
Strand = Plus / Plus
Query: 88 gaaggctttaagtttagttgttgagctaaaggtgggacttcaacaatgaagttatccaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 gaaggctttaagtttagttgttgagctaaaggtgggacttcaacaatgaagttatccaaa 5611
Query: 148 tgcataataattaccaaaatataacatagcaatttgtcctccctctgtggatcgataaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 tgcataataattaccaaaatataacatagcaatttgtcctccctctgtggatcgataaag 5671
Query: 208 aatgacttatcttttgatctaccaaattgaccaggtctagagatggtaaacctttccaaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 aatgacttatcttttgatctaccaaattgaccaggtctagagatggtaaacctttccaaa 5731
Query: 268 atgccatttaatagggcatctggagggttgtttattctttccaataattttgtcttgttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 atgccatttaatagggcatctggagggttgtttattctttccaataattttgtcttgttg 5791
Query: 328 ttaactcttctgttatcgtacaccccagccaaaagtgataaataatatagtaattgcaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 ttaactcttctgttatcgtacaccccagccaaaagtgataaataatatagtaattgcaat 5851
Query: 388 ttttgcatttgtgctgcttgtgttagagttggcaacttgttagccacatattgaaattta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 ttttgcatttgtgctgcttgtgttagagttggcaacttgttagccacatattgaaattta 5911
Query: 448 gtgtatgggaaatattctagcctcttttctgggtcttgctctttcatgatactgccaacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 gtgtatgggaaatattctagcctcttttctgggtcttgctctttcatgatactgccaacg 5971
Query: 508 cgaataaatgaccattcctttttgggtattatgttgtataaaggataaatttgttccaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 cgaataaatgaccattcctttttgggtattatgttgtataaaggataaatttgttccaca 6031
Query: 568 tctgttgcgtctaaatcagccaacggagttggtctatcagaagatacagtttcttgcagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tctgttgcgtctaaatcagccaacggagttggtctatcagaagatacagtttcttgcagt 6091
Query: 628 tcttcctttgaaggcagttctttcgaagcagtcttcactgtgtctacaatatctatcgca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6092 tcttcctttgaaggcagttctttcgaagcagtcttcactgtgtctacaatatctatcgca 6151
Query: 688 gaatcaaccaatttgtctgaatcaatacggtttctttccatatcagcaatggccttcttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6152 gaatcaaccaatttgtctgaatcaatacggtttctttccatatcagcaatggccttcttt 6211
Query: 748 gccttcttagtaccgaacgcctcacctaaagcgtttctcatcaatgcagcacggacgtta 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6212 gccttcttagtaccgaacgcctcacctaaagcgtttctcatcaatgcagcacggacgtta 6271
Query: 808 gcctgttt-atgtcaggtccccatta-gttc-ttctaga-ttggaaag-accttgctgga 862
|||||||| ||||||||| ||||||| |||| ||||||| |||||||| |||||||||||
Sbjct: 6272 gcctgtttaatgtcaggt-cccattaggttctttctagatttggaaagaaccttgctgga 6330
Query: 863 taccagtggtg-cttgtacaa-tctacagacttcgtggc-gcatcataaacaccaac-ac 918
||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct: 6331 taccagtggtgccttgtacaattctacagacttcgtggcggcatcataaacaccaacaac 6390
Query: 919 atactgagaagaa 931
|||||||||||||
Sbjct: 6391 atactgagaagaa 6403
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6851
Number of Sequences: 1807
Number of extensions: 6851
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)