BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE07RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig994 1689 0.0
>3x_Contig994
Length = 4780
Score = 1689 bits (852), Expect = 0.0
Identities = 892/903 (98%), Gaps = 3/903 (0%)
Strand = Plus / Plus
Query: 50 tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2500 tatacacaatgctatagccagcacttatctggagaagtcattgggggaaatttcgtatac 2559
Query: 110 taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2560 taccagacaggctgtggtacaaacatataataataccgcattagtttcgggcatatgtat 2619
Query: 170 gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2620 gtaatccatactttgaaccattgggtacttgataacaagtctacattcgttgcaagtgtg 2679
Query: 230 atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 atggaagtctgagttattttgtgtgaatcttctgttagtttcacaaaacgtcgatctctc 2739
Query: 290 ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 ttcgtcatcactatcgtcacatatatcctgaattcgaaggatatttaaaatcttctcaaa 2799
Query: 350 tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 tctgaaagcataaatgccacgccactcggttaatcgataaagaaacattagtccagagcc 2859
Query: 410 atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 atttgcaaccacaatgcaatttatttcgcgtaagtgacaaaccattattttgttgcttga 2919
Query: 470 gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 gagatcaacacagttgaaattcaagggaaatatcggcctagtaaatgcattcatgataat 2979
Query: 530 tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 tggatctgttccaagcaaactggtctcaaaagtcgaagtagcctcaaatatgaaattact 3039
Query: 590 tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcaaat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 tcctgatgtctttgaaaaaaactttggaccatcgttattaaatcttgattcatcgcaaat 3099
Query: 650 ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 ccgaagatatttaattatcgatttatccacgtattcatcaacagcatctttatcaatgcg 3159
Query: 710 attcagtatagggatatctagttgtctagcggtgaaacaatctttaatattagaaggaga 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 attcagtatagggatatctagttgtctagcggtgaaacaatctttaatattagaaggaga 3219
Query: 770 anaatctccacttttcaaattctga-gatttaatttgagtaaatttncaggtcttgtgga 828
| | |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 3220 aaattctccacttttc-aattctgaggatttaatttgagtaaatttccaggtcttgtgga 3278
Query: 829 agtagatacgtctcaataaatcagctgagcactcaatattgtctattaactggagatcaa 888
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3279 agtagatacgtctcaataaatcagctgagcactcaatattgtctataaactggagatcaa 3338
Query: 889 aacaaggata-cctntnctttcgatnctttaagtttctacttgatcttgtaaagatagaa 947
|||||||||| ||| | |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 3339 aacaaggataccctttcctttcgattcttaaagtttctacttgatcttgtaaagatagaa 3398
Query: 948 att 950
|||
Sbjct: 3399 att 3401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6968
Number of Sequences: 1807
Number of extensions: 6968
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)