BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE08FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1674 1489 0.0
>3x_Contig1674
Length = 12281
Score = 1489 bits (751), Expect = 0.0
Identities = 842/863 (97%), Gaps = 7/863 (0%)
Strand = Plus / Minus
Query: 87 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9312 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 9253
Query: 147 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 9193
Query: 207 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9192 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 9133
Query: 267 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9132 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 9073
Query: 327 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9072 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 9013
Query: 387 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9012 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 8953
Query: 447 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8952 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 8893
Query: 507 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8892 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 8833
Query: 567 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8832 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 8773
Query: 627 gcatatacgagacatctataattctgtatagctgtggcctgtgttcccgtatattcgcag 686
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8772 gcatatacgagacatctataattctgtatagctgtggcctgtgttccgtaatattcgcag 8713
Query: 687 gagcgcatcaatatggcttaaaaaga-tgaatatcg-aaacgaactcgatttattcgttt 744
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 8712 gagcgcatcaatatggcttaaaaagattgaatatcgaaaacgaactcgatttattcgttt 8653
Query: 745 ccacttgaagctttttgcggattaactgtttttcaaattccgttttgaatagttcctcta 804
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8652 ccactgaaggctttttgcggattaactgtttttcaaattccgttttgaatagttcctcta 8593
Query: 805 gatcgacacctttccttgctgcgtctagctcaccggtcttcaccgagataaagcttcttg 864
|||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||
Sbjct: 8592 gatcgacacctttccttgctcgttctagctca-cggtcttcaacgagataaagcttc-tg 8535
Query: 865 aattgttaaagggggcttgtaagttataacttcctaagctgctattgnagtcttgggtat 924
| ||| |||| |||||||||||||||||||| | ||||||||||||| |||||| |||||
Sbjct: 8534 agttggtaaa-ggggcttgtaagttataactccttaagctgctattg-agtctt-ggtat 8478
Query: 925 atttgatttcaaaaaacttttgg 947
|||||||||||||||||||||||
Sbjct: 8477 atttgatttcaaaaaacttttgg 8455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7410
Number of Sequences: 1807
Number of extensions: 7410
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)