BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE08RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1396 0.0
>3x_Contig1777
Length = 26319
Score = 1396 bits (704), Expect = 0.0
Identities = 842/876 (96%), Gaps = 9/876 (1%)
Strand = Plus / Plus
Query: 43 aaggtactggagagatcttcaggtgctgcacggttcccaccgaaacacttttcaaatatt 102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 25065 aaggtactggagagatctgcaggtgctgcacggttcccaccgaaacacttttcaaatatt 25124
Query: 103 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25125 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 25184
Query: 163 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatcttttttgagggccc 222
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 25185 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatcgtccttgagggccc 25244
Query: 223 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25245 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 25304
Query: 283 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25305 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 25364
Query: 343 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25365 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 25424
Query: 403 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25425 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 25484
Query: 463 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25485 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 25544
Query: 523 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 25604
Query: 583 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaattcgcag 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 25605 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatacgcag 25664
Query: 643 atgcattcacaagttataaggggaagtccaatttcaaaaacagcagtttgcaagacactg 702
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 25665 atgcattcacaagttataa-gggaagtccaa-ttcaaaaacagcag-ttgcaagacactg 25721
Query: 703 ttgagcgatgatttatgcggccagcagtagcctactttatcatgtattgagatcgttgga 762
|||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct: 25722 -tgagcgatga-ttaggcggccagcagtag-ctactttatcatgta-tgagatcgttgta 25777
Query: 763 taaatcagttacaaacctgactggacttccac-aagaaattgggtttaaggatattaaag 821
|||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| ||||
Sbjct: 25778 taaatcagttacaaacctgactggacttccacaaagaaatcgggttcaagattataaaag 25837
Query: 822 aataaagcgttttttgcaggctttacccacaattaattacgatgatttgtaggtaccgtt 881
|||||||||| | ||||||||||||| ||| | ||| ||||||||| || |||||||||
Sbjct: 25838 aataaagcgtatattgcaggctttacacacgaataaatacgatgatatgaaggtaccgtc 25897
Query: 882 tattgaccatttaa-taagggtttttttgtgacaaa 916
||||||||| |||| |||| |||| | |||||||||
Sbjct: 25898 tattgaccaattaattaagtgtttatatgtgacaaa 25933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8364
Number of Sequences: 1807
Number of extensions: 8364
Number of successful extensions: 331
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)