BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE10FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1624 0.0
>3x_Contig1776
Length = 26138
Score = 1624 bits (819), Expect = 0.0
Identities = 843/847 (99%), Gaps = 3/847 (0%)
Strand = Plus / Plus
Query: 86 tagccaagatacttcttggggaaggaggcagaacaaataaagtgctttgagccattatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11827 tagccaagatacttcttggggaaggaggcagaacaaataaagtgctttgagccattatga 11886
Query: 146 aatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaatatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11887 aatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaatatt 11946
Query: 206 gaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatcgaagtaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11947 gaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatcgaagtaac 12006
Query: 266 aagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaatgtg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12007 aagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaatgtg 12066
Query: 326 agaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaattttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12067 agaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaattttg 12126
Query: 386 aatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaattgaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12127 aatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaattgaaa 12186
Query: 446 ggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgttttggat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12187 ggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgttttggat 12246
Query: 506 tttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatcattgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12247 tttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatcattgg 12306
Query: 566 ctatgagggcattgtcaaatggctagaagaatgatggtgtacatgtggcaacaataaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12307 ctatgagggcattgtcaaatggctagaagaatgatggtgtacatgtggcaacaataaaat 12366
Query: 626 ggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtcatcttccg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12367 ggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtcatcttccg 12426
Query: 686 ctcgttttgactaaggtcacgtgacttatttaaagtgtattcttttttttttgtaatttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12427 ctcgttttgactaaggtcacgtgacttatttaaagtgtattcttttttttttgtaatttt 12486
Query: 746 ccctgtagaaaag-aacctcaaaga-tcaccatacgtgatattctcaaaaccgtatatag 803
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 12487 ccctgtagaaaagaaacctcaaagattcaccatacgtgatattctcaaaaccgtatatag 12546
Query: 804 aaaattttcagctcatcgcaccggacaggtacagagacttaacttgttcttacagccatg 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12547 aaaattttcagctcatcgcaccggacaggtacagagacttaacttgttcttacagcaatg 12606
Query: 864 tacttatcagtactaagattcgtttagtaagaaggatatta-ttacacagctcagttgta 922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12607 tacttatcagtactaagattcgtttagtaagaaggatattatttacacagctcagttgta 12666
Query: 923 ccaatcc 929
|||||||
Sbjct: 12667 ccaatcc 12673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,106
Number of Sequences: 1807
Number of extensions: 16106
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)