BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE10RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1673 0.0
>3x_Contig1265
Length = 8324
Score = 1673 bits (844), Expect = 0.0
Identities = 869/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Plus
Query: 49 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gcatgtactttcatacattatgtcatcttcgaaaaagaatgaagtggccccacctaaaat 89
Query: 109 ttgttcggtacgtgtctgccagacatcagacccatttgttgcattgtacatatacgcgca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ttgttcggtacgtgtctgccagacatcagacccatttgttgcattgtacatatacgcgca 149
Query: 169 tccgccaagaacaacaccatggttatagctccattcgtatttcacaatggaagtacagtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tccgccaagaacaacaccatggttatagctccattcgtatttcacaatggaagtacagtt 209
Query: 229 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atcgtcgatagtcgcaccatcgaaaacattggcctcttccttcattactacgaaatcaat 269
Query: 289 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcgacaagccaatcgaagaccttttctgctacctccaaataagtagtgttacccgtata 329
Query: 349 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcttccgagtcgtgctgccaattggaagagacaaccattggaaattgtgttcttataatt 389
Query: 409 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtatcccgagttccaggtaaagatttgccatcttaagccaccgttacaatggtctgaatc 449
Query: 469 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccaacgtgagtacatttgattgaaaacagcttgtaccatggccaaccagccaggtgtgcc 509
Query: 529 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtcttccttcggatttgtgaaatttctttccacggcagtcattactgtcaaagcccaaac 569
Query: 589 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 accttgatcatcattaccttccaccatagtttgattacttggcatgtaatcataatcgga 629
Query: 649 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattttgacatag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cccagtttgtgccatcaaagcatcgtaaagcatatcttcatacgatgtattttgacatag 689
Query: 709 ataccaattttcaatcataccttcgaagacaagtccggcttcccaccaatagtatggcga 768
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 690 ataccaattttcaatcatacctccgaagacaagtccggcttcccaccaatagtatggcga 749
Query: 769 tacaaacataccgacagtcccaccatatacgtcaccttcatagtaatcactaataccttg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tacaaacataccgacagtcccaccatatacgtcaccttcatagtaatcactaataccttg 809
Query: 829 ntgaatcanagcagttgctgtacatatcgacgacttggaactagtgtccaaaatcatcgc 888
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 810 ttgaatcaaagcagttgctgtacatatcgacgacttggaactagtgtccaaatcaatcgc 869
Query: 889 aaggacggatactaccgnntaaaaacaagctgtacaa 925
||||||||||||||||| ||||||||||||||||||
Sbjct: 870 aaggacggatactaccg-ttaaaaacaagctgtacaa 905
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5355
Number of Sequences: 1807
Number of extensions: 5355
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)