BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZE11FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1122 1312 0.0
>3x_Contig1122
Length = 4483
Score = 1312 bits (662), Expect = 0.0
Identities = 687/694 (98%), Gaps = 1/694 (0%)
Strand = Plus / Plus
Query: 245 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 76
Query: 305 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 136
Query: 365 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 196
Query: 425 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 256
Query: 485 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 316
Query: 545 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaattgacaaggtaaata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaattgacaaggtaaata 376
Query: 605 tccataaccagcatgaatttcaacaaaatcgtaccctgctttctcgacagcgagcttggc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tccataaccagcatgaatttcaacaaaatcgtaccctgctttctcgacagcgagcttggc 436
Query: 665 actaataccgtattgttttatagttttctcaatttgagcaagcgtcagttcatttggaat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actaataccgtattgttttatagttttctcaatttgagcaagcgtcagttcatttggaat 496
Query: 725 tacaccagaatcatcgaagggtactgtagagggagccactaatttatcaagccatccacc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacaccagaatcatcgaagggtactgtagagggagccactaatttatcaagccatccacc 556
Query: 785 ttcctcatttgggacgtaaacgcctagttcgccatttagaggagatgccagacttgcttt 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttcctcatttgggacgtaaacgcctagttcgccatttagaggagatgccagacttgcttt 616
Query: 845 acgg-cagcatgacccaatgggacacccattttaatattatgaacttgagcccaatctac 903
|||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 617 acggccagcatgacccaattggacaccaattttaatattatgaacatgagcccaatctac 676
Query: 904 atatttttctttatgagtgatggcttgttcatca 937
| ||||||||||||||||||||||||||||||
Sbjct: 677 aatattttctttatgagtgatggcttgttcatca 710
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5623
Number of Sequences: 1807
Number of extensions: 5623
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)