BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF01FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1628 0.0
>3x_Contig1791
Length = 39945
Score = 1628 bits (821), Expect = 0.0
Identities = 857/865 (99%), Gaps = 3/865 (0%)
Strand = Plus / Plus
Query: 86 cgatctcggaaatagattgagcgatggttcaatgtttttaccgactaaaactttaaaagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20240 cgatctcggaaatagattgagcgatggttcaatgtttttaccgactaaaactttaaaagt 20299
Query: 146 atcattctcagaatgccataaattggaaacgatggaaattaagaattcatgcatgtaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20300 atcattctcagaatgccataaattggaaacgatggaaattaagaattcatgcatgtaaat 20359
Query: 206 atacaacactgtatcagcgtatgaacagtaaaataacaaattatagttccttaagataga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20360 atacaacactgtatcagcgtatgaacagtaaaataacaaattatagttccttaagataga 20419
Query: 266 aatcgatatcctatactcctttgccggtatccgccgtctttttgttatataacctgtccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20420 aatcgatatcctatactcctttgccggtatccgccgtctttttgttatataacctgtccg 20479
Query: 326 tcttattgctacccacattcaaaattctgggacagccatctcggcttcgttcagatctgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20480 tcttattgctacccacattcaaaattctgggacagccatctcggcttcgttcagatctgt 20539
Query: 386 ggcagtcccaacaatataacgcttcatgcgttccaggacttccgcaaattatacacctgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20540 ggcagtcccaacaatataacgcttcatgcgttccaggacttccgcaaattatacacctgc 20599
Query: 446 ttccactacttccagaggagcaagagtcgcatatccgtaccttagaaattagccttacat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20600 ttccactacttccagaggagcaagagtcgcatatccgtaccttagaaattagccttacat 20659
Query: 506 ctgaatcacataagggacatcttccatcacatctatcacaaaccttccctacagaggttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20660 ctgaatcacataagggacatcttccatcacatctatcacaaaccttccctacagaggttc 20719
Query: 566 caggaagtttcatgcacataaccaagtcgtactgatggcgagacatcttaatccagtgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20720 caggaagtttcatgcacataaccaagtcgtactgatggcgagacatcttaatccagtgat 20779
Query: 626 aataatagtaatataaatagattaataagacctgacggtgtatggggaaaaacacttagt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20780 aataatagtaatataaatagattaataagacctgacggtgtatggggaaaaacacttagt 20839
Query: 686 tttctgttctttgttttaatatgtgggttcttttagttttgatatctaaggtacaatttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20840 tttctgttctttgttttaatatgtgggttcttttagttttgatatctaaggtacaatttt 20899
Query: 746 atagaagatgggcttaagtggcagccgttgattt-aacaggaactgatctacaggatagg 804
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 20900 atagaagatgggcttaagtggcagccgttgatttaaacaggaactgatctacaggatagg 20959
Query: 805 ccaaaaaaacgaagaaaagtaggttttggaaaccgttcatattatatgaccctccgagca 864
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20960 ccaaaaaaacgaagaaaagtagg-tttggaaaccgttcatattatatgaccctccgagca 21018
Query: 865 actacattatatattacaagatgatttgaatatgtggtatttgtttggaatctatgaatt 924
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 21019 actacattatatatcacaagatgattgaaatatgtggtatttgtttggaatctatgaatg 21078
Query: 925 gaactgatcaa-gggagcttttacc 948
|||||||||| |||||||||||||
Sbjct: 21079 aaactgatcaaggggagcttttacc 21103
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)