BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF01RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1671 0.0
>3x_Contig1774
Length = 27771
Score = 1671 bits (843), Expect = 0.0
Identities = 896/911 (98%), Gaps = 3/911 (0%)
Strand = Plus / Plus
Query: 44 acatggacgtttttgctattgccaacatgaaaagagcaattgatatatatactagctcag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24214 acatggacgtttttgctattgccaacatgaaaagagcaattgatatatatactagctcag 24273
Query: 104 gtgttcaacttgcccatctaccgacagcaaccgttccagcagttatcagctggcatccga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24274 gtgttcaacttgcccatctaccgacagcaaccgttccagcagttatcagctggcatccga 24333
Query: 164 cacagaattgggtagttggcggaaattcaagcggtaaagccttcttgttcatttaatgat 223
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24334 cacagaattgggtagttggcggaaattcaagcggtaaagccttcttgttcacttaatgat 24393
Query: 224 caacggaatcagaagatataaaaggacagtaacgatgaaaagctacttgtacgtttttga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24394 caacggaatcagaagatataaaaggacagtaacgatgaaaagctacttgtacgtttttga 24453
Query: 284 gtgtatatattttgagtttaattatcattgataataactaatgctaaatatcgttctttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24454 gtgtatatattttgagtttaattatcattgataataactaatgctaaatatcgttctttc 24513
Query: 344 taaagcgaggaaaaacgagttagtgttaggagttattcgtataatttgttctgttttaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24514 taaagcgaggaaaaacgagttagtgttaggagttattcgtataatttgttctgttttaat 24573
Query: 404 cgtagttgaaaagaaataggatatcagctcgttgataagctattacttcaataatatgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24574 cgtagttgaaaagaaataggatatcagctcgttgataagctattacttcaataatatgat 24633
Query: 464 agtgaaatcaaagatactattgaagtaaatgagtcaacaataacccagttgacaggaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24634 agtgaaatcaaagatactattgaagtaaatgagtcaacaataacccagttgacaggaaaa 24693
Query: 524 aaacttcgaatcgtaataacatccatatgagagaatgagggggtaatgctatgctaaagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24694 aaacttcgaatcgtaataacatccatatgagagaatgagggggtaatgctatgctaaagg 24753
Query: 584 ggattctatcaaaaaaaagagctctttagttgagactgcacgaatgcatttagaatgtaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24754 ggattctatcaaaaaaaagagctctttagttgagactgcacgaatgcatttagaatgtaa 24813
Query: 644 atcatgttatcagaatcaagagtctcattttttgtttgtaaaagagcgatgaaacgcgat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24814 atcatgttatcagaatcaagagtctcattttttgtttgtaaaagagcgatgaaacgcgat 24873
Query: 704 aagagaaagggtaaggcaaagaagtangtatacctgatcgacaaatatgacggttcatgg 763
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24874 aagagaaagggtaaggcaaagaagtaggtatacctgatcgacaaatatgacggttcatgg 24933
Query: 764 tagggcacctgggatctcatnctttatatagatcatcaagtgtccttttgaaccttcacc 823
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct: 24934 tagggcacctgggatctcatccttataatagatcatcaagtgtcctttgaaaccttcacc 24993
Query: 824 gttaggatcataattacnctgggaatcgacctccgttttgaccgaagtagaagtccanat 883
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 24994 gttaggatcataattacccttggaatcgacct-cgttttgaccgaagtagaagtccaaat 25052
Query: 884 aatttctgaatccgaaatactcgtaaacagattta-ccttatcagatatggctttctaag 942
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 25053 aatttctgaatccgaaatactcgtaaacagatttagccttatcagatatggc-ttctaag 25111
Query: 943 accataccaca 953
|||||| ||||
Sbjct: 25112 accatagcaca 25122
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7303
Number of Sequences: 1807
Number of extensions: 7303
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)