BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF02FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig848 242 1e-63
3x_Contig1347 167 5e-41
3x_Contig1020 163 8e-40
3x_Contig587 163 8e-40
3x_Contig1 155 2e-37
3x_Contig720 145 2e-34
3x_Contig1044 139 1e-32
3x_Contig1798 135 2e-31
3x_Contig537 117 4e-26
>3x_Contig848
Length = 3091
Score = 242 bits (122), Expect = 1e-63
Identities = 141/146 (96%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 414 ccagtattacaggcagttgggaagatcagaaaaaggaaaaatggaaaaaaaagaaagccc 473
||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 956 ccagtattacaggcagttgggaagatcagaaaaagagaaaatgggaaaaaa-gaaagccc 1014
Query: 474 tgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgctaccgattgcgcc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgctaccgattgcgcc 1074
Query: 534 agcaaggcctaatttcttgaaaaacg 559
|||||||||||||||||||| |||||
Sbjct: 1075 agcaaggcctaatttcttgagaaacg 1100
Score = 216 bits (109), Expect = 6e-56
Identities = 118/121 (97%)
Strand = Plus / Plus
Query: 87 tgaagcaagaaattgccgaagaaaaggcttttatcgcttccaaaccattctactacagaa 146
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgaaacaagaaattgccgaagaaaaggcttttatcgcttccaaaccattctactacagaa 639
Query: 147 tgtacaagttctggtgttgaataccagtattaacgaatgctaatcgagaagggctgagcc 206
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 640 tgtacaagttctggtgttgaataccagtattaacgaatgctaattgggaagggctgagcc 699
Query: 207 c 207
|
Sbjct: 700 c 700
>3x_Contig1347
Length = 6130
Score = 167 bits (84), Expect = 5e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 461 aaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 aaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 4708
Query: 521 taccgattgcgccagcaaggccta 544
||||||||||||||||||||||||
Sbjct: 4709 taccgattgcgccagcaaggccta 4732
>3x_Contig1020
Length = 4879
Score = 163 bits (82), Expect = 8e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 461 aaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3541 aaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 3600
Query: 521 taccgattgcgccagcaaggcc 542
||||||||||||||||||||||
Sbjct: 3601 taccgattgcgccagcaaggcc 3622
>3x_Contig587
Length = 1528
Score = 163 bits (82), Expect = 8e-40
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 458 aaaaaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacg 517
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aaaaaaaagaaagccctgtggggggctcgaacccccaaccttgtgattaagagtcacacg 232
Query: 518 cgctaccgattgcgccagcaaggcctaatt 547
||||||||||||||||| ||||||||||||
Sbjct: 233 cgctaccgattgcgccaacaaggcctaatt 262
>3x_Contig1
Length = 735
Score = 155 bits (78), Expect = 2e-37
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 460 aaaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcg 519
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaaaacaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcg 220
Query: 520 ctaccgattgcgccagcaaggc 541
||||||||||||||||||||||
Sbjct: 219 ctaccgattgcgccagcaaggc 198
>3x_Contig720
Length = 2178
Score = 145 bits (73), Expect = 2e-34
Identities = 79/81 (97%)
Strand = Plus / Minus
Query: 461 aaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 520
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 aaaaagaaagccctgtggggggctcgaacccccaaccttgtgattaagagtcacacgcgc 1397
Query: 521 taccgattgcgccagcaaggc 541
|||||||||||||| ||||||
Sbjct: 1396 taccgattgcgccaacaaggc 1376
>3x_Contig1044
Length = 4552
Score = 139 bits (70), Expect = 1e-32
Identities = 79/82 (96%)
Strand = Plus / Minus
Query: 460 aaaaaagaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcg 519
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 aaaaaataaagccctgtggggggctcgaacccccaaccttgtgattaagagtcacacgcg 3574
Query: 520 ctaccgattgcgccagcaaggc 541
||||||||||||||| ||||||
Sbjct: 3573 ctaccgattgcgccaacaaggc 3552
>3x_Contig1798
Length = 38968
Score = 135 bits (68), Expect = 2e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 466 gaaagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgctaccg 525
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31957 gaaagccctgtggggggctcgaacccccaaccttgtgattaagagtcacacgcgctaccg 32016
Query: 526 attgcgccagcaaggc 541
||||||||| ||||||
Sbjct: 32017 attgcgccaacaaggc 32032
>3x_Contig537
Length = 3151
Score = 117 bits (59), Expect = 4e-26
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 468 aagccctgcggggggctcgaacccccaaccttgtgattaagagtcacacgcgctaccgat 527
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3019 aagccctgcggggggctcgaacccc-aaccttgtgattaagagtcacacgcgctaccgat 3077
Query: 528 tgcgcca 534
|||||||
Sbjct: 3078 tgcgcca 3084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7170
Number of Sequences: 1807
Number of extensions: 7170
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 9
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)