BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF02RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1631 0.0
>3x_Contig1801
Length = 57606
Score = 1631 bits (823), Expect = 0.0
Identities = 887/907 (97%), Gaps = 4/907 (0%)
Strand = Plus / Plus
Query: 48 tgagaggtggtgctcaaattattgttggtactccaggtcgtgttttcgatatgatcgacc 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 tgagaggtggtgctcaaatcattgttggtactccaggtcgtgttttcgatatgatcgacc 4136
Query: 108 gtagaatcttcaagactgacaacatcaagatgttcatcttggatgaagccgatgaaatgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 gtagaatcttcaagactgacaacatcaagatgttcatcttggatgaagccgatgaaatgt 4196
Query: 168 tgtctactggtttcaaggaacaaatctacaacattttcaccatgttgccaccttcttccc 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4197 tgtctactggtttcaaggaacaaatctacaacattttcaccatgttgccaccaacttccc 4256
Query: 228 aagttgtcttgttgtctgctaccatgccaggtgatgtcttggaagtcacttccaagttca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4257 aagttgtcttgttgtctgctaccatgccaggtgatgtcttggaagtcacttccaagttca 4316
Query: 288 tgaaggacccagtcagaatcttggttaagaaggatgaattgaccttggaaggtattggtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4317 tgaaggacccagtcagaatcttggttaagaaggatgaattgaccttggaaggtattggtc 4376
Query: 348 aatactacgttaacgttgaagaagaacaatacaagtacgactgtttgaccgatttgtacg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4377 aatactacgttaacgttgaagaagaacaatacaagtacgactgtttgaccgatttgtacg 4436
Query: 408 attctatctccgttacccaagctgttattttctgtaacaccagaagaaaggtcgaagaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4437 attctatctccgttacccaagctgttattttctgtaacaccagaagaaaggtcgaagaat 4496
Query: 468 tgaccgaaagattgagagaaaacaacttcaccgtctctgctatctactctgatttgcaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4497 tgaccgaaagattgagagaaaacaacttcaccgtctctgctatctactctgatttgcaac 4556
Query: 528 aacaggaaagagacaccatcatgaaggaattcagaagtggttcttcaagaattttgatct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4557 aacaggaaagagacaccatcatgaaggaattcagaagtggttcttcaagaattttgatct 4616
Query: 588 ccactgatttgttggctagaggtatcgatgtccaacaagtctctttggttatcaactacg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4617 ccactgatttgttggctagaggtatcgatgtccaacaagtctctttggttatcaactacg 4676
Query: 648 acttgccatccaacaaggaaaactatatccacagaatcggtagaggtggtcgtttcggta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4677 acttgccatccaacaaggaaaactatatccacagaatcggtagaggtggtcgtttcggta 4736
Query: 708 gaaagggtattgctatcaacttcgtcaccaataaggatatcggtgctatgagagaattgg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4737 gaaagggtattgctatcaacttcgtcaccaataaggatatcggtgctatgagagaattgg 4796
Query: 768 aaagattctactctactcaaattgaagaattgccatcaagcatcagcgaattgttcgatt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4797 aaagattctactctactcaaattgaagaattgccatcaagcatcagcgaattgttcgatt 4856
Query: 828 aaactt--ttataatanaaaaaaataggaattatcaacatcagatccaaacatttattan 885
|||||| | | | | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4857 aaacttaataaataaaaaaaaaaataggaataatcaacatcagatccaaacatttattag 4916
Query: 886 gagganaaaaagttaag-ttggctttgnccgctactgnnnatttc-ttaactatctctct 943
||||| ||||||||||| ||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 4917 gaggaaaaaaagttaagtttggctttgtccgctactgttattttctttaactatctctct 4976
Query: 944 attcaaa 950
|||||||
Sbjct: 4977 attcaaa 4983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7911
Number of Sequences: 1807
Number of extensions: 7911
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)