BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF03FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1513 1580 0.0
>3x_Contig1513
Length = 11967
Score = 1580 bits (797), Expect = 0.0
Identities = 849/861 (98%), Gaps = 4/861 (0%)
Strand = Plus / Plus
Query: 86 aacgaccaataatagagttccatcctattaatacactaataattataacctaatgataat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aacgaccaataatagagttccatcctattaatacactaataattataacctaatgataat 270
Query: 146 gaatgattatatatacacatactattttatatagacttttaatctctgcagttcttttat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaatgattatatatacacatactattttatatagacttttaatctctgcagttcttttat 330
Query: 206 aataaagagacaacatattgtgaaatcgaataaaagctttttctatttcctaacttcttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aataaagagacaacatattgtgaaatcgaataaaagctttttctatttcctaacttcttc 390
Query: 266 cttcttgtatcagatatttgatcgttcaatagtatagattacaaagggattggatcctta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cttcttgtatcagatatttgatcgttcaatagtatagattacaaagggattggatcctta 450
Query: 326 ctaaagttgattgcaacgattgcatcagttgcttattgttagaacattctttttctaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctaaagttgattgcaacgattgcatcagttgcttattgttagaacattctttttctaaat 510
Query: 386 cttctattcgtctttcattcttgatcaatgtcaacctgatcaacttgaattcttccttcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cttctattcgtctttcattcttgatcaatgtcaacctgatcaacttgaattcttccttcg 570
Query: 446 aaacagaacccagtttcaacgctgctaatagagtattgttgaaatcctgagtcaaattat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaacagaacccagtttcaacgctgctaatagagtattgttgaaatcctgagtcaaattat 630
Query: 506 gctctgggttgaaccgttgtgaaaattctgctgtaacataattagatgaacactcacaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gctctgggttgaaccgttgtgaaaattctgctgtaacataattagatgaacactcacaag 690
Query: 566 tagcacttcttggttcacgcaaaaagatcttgttgatagacgctctcc-aatcactgccg 624
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 691 tagcacttcttggttcacgcaaaaagatcttgttgatagacgctctccaaatcactgccg 750
Query: 625 ttcgatagagcttcattttccgaagaagaaactggtttgaaaacagagcaaaattcagga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttcgatagagcttcattttccgaagaagaaactggtttgaaaacagagcaaaattcagga 810
Query: 685 gtcttacttgcatcatctttaaattgattcagtgtcttattcagatcaacacgtttcgta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gtcttacttgcatcatctttaaattgattcagtgtcttattcagatcaacacgtttcgta 870
Query: 745 aaagctatttttgagacaggtgccttcattttataggactgcggacacgtagccgcagca 804
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 871 aaagctatttttgagacaggtgccttcattttataggactgcgacaacgtagccgcagca 930
Query: 805 taactgggcgatttaccagagagtgtctttaccaatttttggtcaatacgaatgctgcta 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 taactgggcgatttaccagagagtgtctttaccaatttttggtcaatacgaatgctgcta 990
Query: 865 tgcattattttgaccggttgtctattggnaaagtggctctaaacttttgaggaaaatggt 924
|||||||| ||||||||||||||| ||| | |||||||||||||| |||||| |||||||
Sbjct: 991 tgcattatattgaccggttgtctaatgg-agagtggctctaaactcttgagg-aaatggt 1048
Query: 925 at-aactatttggattggaag 944
|| ||||||||| ||||||||
Sbjct: 1049 ataaactatttgcattggaag 1069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7440
Number of Sequences: 1807
Number of extensions: 7440
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)