BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF03RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig891 1673 0.0
>3x_Contig891
Length = 5018
Score = 1673 bits (844), Expect = 0.0
Identities = 872/880 (99%), Gaps = 1/880 (0%)
Strand = Plus / Plus
Query: 48 agaaagagaagaaagagacataaggccgagaagagaaagcagagccagggatgatcacat 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agaaagagaagaaagagacaaaaggccgagaagagaaagcagagccagggatgatcacat 61
Query: 108 ctccctttctccgggcaatccatcatgtatatatatacgttacaagatttataatctgta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctccctttctccgggcaatccatcatgtatatatatacgttacaagatttataatctgta 121
Query: 168 aatatcatctaatccagaccataatgaaatacaagaaaaacatcttttttaagccagctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aatatcatctaatccagaccataatgaaatacaagaaaaacatcttttttaagccagctt 181
Query: 228 atattaagtgtgtatgttatgtaggtgtgtgcgtgtacgtgtgtttatttagaatgttat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atattaagtgtgtatgttatgtaggtgtgtgcgtgtacgtgtgtttatttagaatgttat 241
Query: 288 aatgcttccagagcctatttttttgtctcaaattagacgacgaagaatggtatacacgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatgcttccagagcctatttttttgtctcaaattagacgacgaagaatggtatacacgaa 301
Query: 348 taccatattgaagacgatcaatgcaaaaacgatgagttttttcacctctggtgtcaactt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taccatattgaagacgatcaatgcaaaaacgatgagttttttcacctctggtgtcaactt 361
Query: 408 ttcagagtacttccattcctctgacaggaacgagatcagcttgtatgagaacttacccat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcagagtacttccattcctctgacaggaacgagatcagcttgtatgagaacttacccat 421
Query: 468 caactcagctctgttaatttcaccaatttcagcaacgacttccatgttcctttggaaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caactcagctctgttaatttcaccaatttcagcaacgacttccatgttcctttggaaaat 481
Query: 528 cgtctgcgacacctcgataatacgtagcttctcagcctcggtcaattcagtcctcgtagc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgtctgcgacacctcgataatacgtagcttctcagcctcggtcaattcagtcctcgtagc 541
Query: 588 aagctcgtaccccttcttgtattgccaacgtagtctgttctcgtcatccacaccttcttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagctcgtaccccttcttgtattgccaacgtagtctgttctcgtcatccacaccttcttc 601
Query: 648 actgaaagtgaagaaatttgtcgctcttctcaccaattccttaggtgacaaatgtccgaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actgaaagtgaagaaatttgtcgctcttctcaccaattccttaggtgacaaatgtccgaa 661
Query: 708 tttggggaaaagaccaatgtgacggtacaaattcgacttcatgaccctaccaccagcgaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tttggggaaaagaccaatgtgacggtacaaattcgacttcatgaccctaccaccagcgaa 721
Query: 768 aagtgccaaatatagcacatgtcagtacgcaagaatcgtatgaggctccttctgtacgtt 827
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aagtgccaaatatagcacatggcagtacgcaagaatcgtatgaggctccttctgtacgtt 781
Query: 828 ggaatggatctcatcgacaaactcttgc-actttgcaggtaactggaacccatcccaaga 886
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
Sbjct: 782 ggaatggatctcatcgacaaactcttgcaacttggcaggtaactggaacccatccaagaa 841
Query: 887 ctcttgcaactgctcgctgcctggatactcatcggtgtac 926
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 842 ctcttgcaactgctcgctgcctggatactcatcgttgtac 881
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6613
Number of Sequences: 1807
Number of extensions: 6613
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)