BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF04RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1602 1671 0.0
>3x_Contig1602
Length = 12694
Score = 1671 bits (843), Expect = 0.0
Identities = 873/882 (98%), Gaps = 1/882 (0%)
Strand = Plus / Minus
Query: 47 tcactaatgaacaaatggttcgtaacggcgtcggtcaaagaactttccgattcgtggaag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6321 tcactaatgaacaaatggttcgtaacggcgtcggtcaaagaactttccgattcgtggaag 6262
Query: 107 aattcacgaaggataccctcctaaaggatgacgagttaagaaacaccgttaagattcata 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6261 aattcacgaaggataccctcctaaaggatgacgagttaagaaacaccgttaagattcata 6202
Query: 167 ttctaaaaagtgagaagactaccgtggagctaagagatattaatatcgcacaacagaatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6201 ttctaaaaagtgagaagactaccgtggagctaagagatattaatatcgcacaacagaatc 6142
Query: 227 ctaatgcaaaagatgcaggtggcttatttggtatagctatgaaggaattagaaagatatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6141 ctaatgcaaaagatgcaggtggcttatttggtatagctatgaaggaattagaaagatatg 6082
Query: 287 gtgcaccatttaatgacaactataacacttctcaagctgctgtcatgttcatggatagtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081 gtgcaccatttaatgacaactataacacttctcaagctgctgtcatgttcatggatagtc 6022
Query: 347 attgggacaaaaaactgaaattgattactgcgcatgccgctctcggtggtggtacaaata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6021 attgggacaaaaaactgaaattgattactgcgcatgccgctctcggtggtggtacaaata 5962
Query: 407 agatcaaacttgcaattttcggttcccatggtctgtattcttggcctacttgctttcaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5961 agatcaaacttgcaattttcggttcccatggtctgtattcttggcctacttgctttcaag 5902
Query: 467 acattgttccttactttttagatgataccagagcaagcacctctgaagtagccaatgatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 acattgttccttactttttagatgataccagagcaagcacctctgaagtagccaatgatt 5842
Query: 527 gtaaccagtgcggtacccactgggaatgtctcgcaattacactaggtgcattcatgcatg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 gtaaccagtgcggtacccactgggaatgtctcgcaattacactaggtgcattcatgcatg 5782
Query: 587 aaataggacacttgctaggctgtccacatcaagaaaatggggtaatgttaagagattaca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 aaataggacacttgctaggctgtccacatcaagaaaatggggtaatgttaagagattaca 5722
Query: 647 tgactttgaacagatcgttccttaccaaagaagcttacagtttaagaactaattcatatg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 tgactttgaacagatcgttccttaccaaagaagcttacagtttaagaactaattcatatg 5662
Query: 707 gtgcccaatctccaatatatcctaaactcgaatgtacatggcacagattggatattcttc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 gtgcccaatctccaatatatcctaaactcgaatgtacatggcacagattggatattcttc 5602
Query: 767 gattcttataccatcccagctttgcactacctcaagacttttatgatccgccattattaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5601 gattcttataccatcccagctttgcactacctcaagacttttatgatccgcaattattaa 5542
Query: 827 gaccaggtcagctagatcattgggaatatcagaaggccacctttgttccgatgggaaatc 886
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 5541 gaccaggtcagctagatcattggaaatatcagaaggccaccttgttcccgatgggaaatc 5482
Query: 887 aaactngcagtattaaatncggaatcaggtatctactgtatt 928
||||| |||||||||| |||||||||||||||||||||||
Sbjct: 5481 aaactgcaagtattaaat-cggaatcaggtatctactgtatt 5441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5816
Number of Sequences: 1807
Number of extensions: 5816
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)