BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF05FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1516 0.0
>3x_Contig1463
Length = 9363
Score = 1516 bits (765), Expect = 0.0
Identities = 827/842 (98%), Gaps = 6/842 (0%)
Strand = Plus / Minus
Query: 87 aggttgaaatcaacagcagcgctggaatcaggtggtggaaacatttgatcctgtgcaccg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 aggttgaaatcaacagcagcgctggaatcaggtggtggaaacatttgatcctgtgcaccg 1700
Query: 147 ggaaagaatccagaatgaggcatgtgcatcataggatggtacggcatgaatggattcatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 ggaaagaatccagaatgaggcatgtgcatcataggatggtacggcatgaatggattcatc 1640
Query: 207 atgtggggagcgaacataggtgctggtccggggcctgatggacctggtactaacgaatca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 atgtggggagcgaacataggtgctggtccggggcctgatggacctggtactaacgaatca 1580
Query: 267 cccatgaaaaactcttgctgctgcaactgttgtggaatagtaccaccgtttgtagcgcta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 cccatgaaaaactcttgctgctgcaactgttgtggaatagtaccaccgtttgtagcgcta 1520
Query: 327 gtagcattgttaccgttacctctgttgttactaattgtttcagttgcggctgctattggc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 gtagcattgttaccgttacctctgttgttactaattgtttcagttgcggctgctattggc 1460
Query: 387 gcggcatcgtttccagtctcctgatctggttcttgagtattagagtttgagtttggtttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 gcggcatcgtttccagtctcctgatctggttcttgagtattagagtttgagtttggtttt 1400
Query: 447 tcaacaacatcatccaaatgcaattggcctaaagccgcattaatggtttctggaacagaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 tcaacaacatcatccaaatgcaattggcctaaagccgcattaatggtttctggaacagaa 1340
Query: 507 actgggtcaatattcatggttaaagtatgcctagtagtaatatacaaagaaaaaaaaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 actgggtcaatattcatggttaaagtatgcctagtagtaatatacaaagaaaaaaaaaga 1280
Query: 567 tctcttctgtctgtatgtgcgagttctgatctttttcgattcaattatgagatgcaatat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 tctcttctgtctgtatgtgcgagttctgatctttttcgattcaattatgagatgcaatat 1220
Query: 627 ggcacgaaatggaaagggaaaaaagcaaaaataggatagcagtggaaagggatattcgtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 ggcacgaaatggaaagggaaaaaagcaaaaataggatagcagtggaaagggatattcgtc 1160
Query: 687 tagtttacactaatgtacagggaatgagagatgatgatgatgagccttatcgattgtaga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 tagtttacactaatgtacagggaatgagagatgatgatgatgagccttatcgattgtaga 1100
Query: 747 ttacagctttgaaagatataagaaaatccttactatcgaaaggaatcaaagcaggtcggg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1099 ttacagctttgaaagatataagaaaatccttactatcgaaaggaatcaaagcagg-cggg 1041
Query: 807 aaataagggaacataaggaacaaagaaac-aaaaaggacaacaacggtcgctgctgagaa 865
||| |||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1040 aaaaaaggaaacaaaagaaacaaagaaacaaaaaaggacaacaacggtcgctgctgagaa 981
Query: 866 aaaaa--tgntatcacaggtaggaaga-tcaaacanattacccttggtc-actagaatga 921
||||| | ||||||||||||||||| ||||||| | || |||||||| ||||||||||
Sbjct: 980 aaaaaatggatatcacaggtaggaagattcaaacacaataaccttggtcaactagaatga 921
Query: 922 aa 923
||
Sbjct: 920 aa 919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8412
Number of Sequences: 1807
Number of extensions: 8412
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)