BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF05RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1733 0.0
>3x_Contig1708
Length = 19451
Score = 1733 bits (874), Expect = 0.0
Identities = 905/915 (98%), Gaps = 1/915 (0%)
Strand = Plus / Plus
Query: 44 gctttgacaaaaaatcgggccttgaatgatgatactttacagttattcttgaacaccagt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17815 gctttgacaaaaaatcgggccttgaatgatgatactttacagttattcttgaacaccagt 17874
Query: 104 ttaactactttgacgttttatgactgttcaaagttgtcatatgaaggctacaagagactt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17875 ttaactactttgacgttttatgactgttcaaagttgtcatatgaaggctacaagagactt 17934
Query: 164 gccatcttttcgccgcatttagagtcgctttccttacagatgtgtggacagttaaataat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17935 gccatcttttcgccgcatttagagtcgctttccttacagatgtgtggacagttaaataat 17994
Query: 224 gaagctctcttgtatctagccgaaaagctaccaaacctaaaagaactataccttgatgga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17995 gaagctctcttgtatctagccgaaaagctaccaaacctaaaagaactataccttgatgga 18054
Query: 284 ccgttcttaattaatgaggatacatgggttcaattcttcgaattgctaaagggtagactt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18055 ccgttcttaattaatgaggatacatgggttcaattcttcgaattgctaaagggtagactt 18114
Query: 344 actgcttttcatgtttccaatacccatagattcaatgataatgcattgtcagctatgctt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18115 actgcttttcatgtttccaatacccatagattcaatgataatgcattgtcagctatgctt 18174
Query: 404 cgaaattgtggatcgtccttggaatctctaggtctagcaactctagatactgtgacaaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18175 cgaaattgtggatcgtccttggaatctctaggtctagcaactctagatactgtgacaaat 18234
Query: 464 tacgccctattaccgcaatatcttaactctcctaatttccacactttgatcttggaagag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18235 tacgccctattaccgcaatatcttaactctcctaatttccacactttgatcttggaagag 18294
Query: 524 ccatctagagaaacagatattaatgacgaggttattataagtttgttaggatccataggc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18295 ccatctagagaaacagatattaatgacgaggttattataagtttgttaggatccataggc 18354
Query: 584 cagaaccttaggaagttgtcgctcaatagatgcactggcttgactgatagctgtataatt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18355 cagaaccttaggaagttgtcgctcaatagatgcactggcttgactgatagctgtataatt 18414
Query: 644 aatggatttttaccatttttgtctaactcagggcaatcaatccttacagacttggaatta 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18415 aatggatttttaccatttttgtctaactcagggcaatcaatccttacagacttggaatta 18474
Query: 704 gaagaattggatcagataaccaccgacggcatagttctattattctcttcgttgcagttc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18475 gaagaattggatcagataaccaccgacggcatagttctattattctcttcgttgcagttc 18534
Query: 764 cctttgttgaaaagatgtagcttgaaaagatgttttgctttggaggatgcagccgtagtt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18535 cctttgttgaaaagatgtagcttgaaaagatgttttgctttggaggatgcagccgtagtt 18594
Query: 824 gaattattacttaactcctctttcaccttanaagagttgaatctaaatggtctgaaatcc 883
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 18595 gaattattacttaactcctcttccaccttagaagagttgaatctaaatggtctgaaatcc 18654
Query: 884 cttacatncaaaactttcaccttcatggcatgtnctaaccctcagcagcttaatataggg 943
|| |||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 18655 ctaacatccaaaactttcaccttcatggcatgtcctaacctcaagcagctaaatataggg 18714
Query: 944 ttttgtccactgtgt 958
||||||||||||||
Sbjct: 18715 -tttgtccactgtgt 18728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6664
Number of Sequences: 1807
Number of extensions: 6664
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)