BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1449 0.0
3x_Contig1051 147 5e-35
3x_Contig1718 145 2e-34
3x_Contig844 145 2e-34
3x_Contig1747 143 7e-34
3x_Contig1468 143 7e-34
3x_Contig939 135 2e-31
>3x_Contig1184
Length = 5183
Score = 1449 bits (731), Expect = 0.0
Identities = 845/878 (96%), Gaps = 4/878 (0%)
Strand = Plus / Minus
Query: 46 gcttcacaactcgaaaagttttaacagtgcacgtttctttttgatatttaagctgcaaca 105
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2649 gcttcacaact-gaaaagttttaacagtgcacgtttctttttgatatttaagctgcaaca 2591
Query: 106 gagaaaagagacattttgaccgcgatgagattaaggtaccattacctcattctcaaatat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2590 gagaaaagagacattttgaccgcgatgagattaaggtaccattacctcattctcaaatat 2531
Query: 166 acgtgcgattcgctaaacataactacgttgactgactcataggaaaggcccattatttga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 2530 acgtgcgattcgctaaacataactacgttgactgactcataggaaaggcccatcattaga 2471
Query: 226 tggatgctcctaatgacgatagaatgcttgaatatgtgaagattgtagatttcagtgact 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2470 tggatgctcctaatgacgatagaatgcttgaatatgtgaagattgtagatttcagtgact 2411
Query: 286 tagagtcatagtattccagttcaacataaacaagacaaaaactaacgtccattggcgttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2410 tagagtcatagtattccagttcaacataaacaagacaaaaactaacgtccattggcgttt 2351
Query: 346 cttacttgaattttcctgttcagcatactatatgaagcttgcatacttaccatgttgggt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2350 cttacttgaattttcctgttcagcatactatatgaagcttgcatacttaccatgttgggt 2291
Query: 406 cctactggacactgtagttagatggcagaagattagattgtaataagaaaatcacgtttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 cctactggacactgtagttagatggcagaagattagattgtaataagaaaatcacgtttg 2231
Query: 466 attatgaatgcacgtga-caaaagaactaaacatagtgctcgagagtttagtactttcaa 524
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2230 attatgaatgcacgtgatcaaaagaactaaacatagtgctcgagagtttagtactttgaa 2171
Query: 525 aaaaaaagctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggt 584
||||||||||||||||||||||||| || | || |||||||||||||||||||||| | |
Sbjct: 2170 aaaaaaagctcccgtggcgtaatgggaaggggtgtgacttctaatcagaagattgt-gtt 2112
Query: 585 tcgacccccaccgtgagtgcttttatttttttaatttttttttacatctctggtcttctt 644
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 tttacccccaccgtgagtgcttttatttttttaatttttttttacatctctggtcttctt 2052
Query: 645 tttctaaggaatgagagcattatgaaggaaggcattgctgcagcaatgttcataatatca 704
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2051 tttctaaggaatgagagcattaggaaggaaggcattgctgcagcaatgttcataatatca 1992
Query: 705 acagatactacccaccattttgtgttattcttttattcaacgtacctatatnatgtatta 764
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1991 acagatactacccaccattttgtgttattcttttattcaacgtacctatattatgtatta 1932
Query: 765 tacagctctaattctttagtacgtatgattaatatctataggttatgaaaccataaatac 824
|||||||||||| || || ||||||||| | |||||||| | ||||||| |||||||
Sbjct: 1931 tacagctctaatctttaagaacgtatgataataatctatagttaatgaaacattaaatac 1872
Query: 825 taatacgtcgcagacgcattaccgtttgtcatcggtgcaacatgctcacaattgtcttgg 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1871 taatacgtcgcagacgcattaccgtttgtcatcggtgcaacatgctcacaattgtctttg 1812
Query: 885 ttatcggcatcgtccctgaatatgggagatgagctttg 922
|||||| ||| || ||||| || ||||||||||||||
Sbjct: 1811 ttatcgtcattgt-cctgagaattggagatgagctttg 1775
>3x_Contig1051
Length = 4315
Score = 147 bits (74), Expect = 5e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 530 aagctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 589
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 aagctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 3960
Query: 590 ccccaccgtgagtgcttt 607
||||||||||||||||||
Sbjct: 3961 ccccaccgtgagtgcttt 3978
>3x_Contig1718
Length = 19496
Score = 145 bits (73), Expect = 2e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 531 agctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 590
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 agctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 4359
Query: 591 cccaccgtgagtgcttt 607
|||||||||||||||||
Sbjct: 4358 cccaccgtgagtgcttt 4342
>3x_Contig844
Length = 2953
Score = 145 bits (73), Expect = 2e-34
Identities = 83/85 (97%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 532 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 591
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 1638
Query: 592 ccaccgtgagtgcttttattttttt 616
||||||||||||| |||||||||||
Sbjct: 1639 ccaccgtgagtgc-tttattttttt 1662
>3x_Contig1747
Length = 15671
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 532 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 591
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2496
Query: 592 ccaccgtgagtgcttt 607
||||||||||||||||
Sbjct: 2495 ccaccgtgagtgcttt 2480
>3x_Contig1468
Length = 9852
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 532 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 591
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8709 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 8650
Query: 592 ccaccgtgagtgcttt 607
||||||||||||||||
Sbjct: 8649 ccaccgtgagtgcttt 8634
>3x_Contig939
Length = 3877
Score = 135 bits (68), Expect = 2e-31
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 532 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 591
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2150
Query: 592 ccaccgtgagtg 603
||||||||||||
Sbjct: 2149 ccaccgtgagtg 2138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7927
Number of Sequences: 1807
Number of extensions: 7927
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 7
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)