BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF08FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig806 1622 0.0
>3x_Contig806
Length = 2480
Score = 1622 bits (818), Expect = 0.0
Identities = 863/874 (98%), Gaps = 4/874 (0%)
Strand = Plus / Minus
Query: 87 ctgcggaacacctttcgttgaatattctatcctgcatatttatgctcttctacatctcct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ctgcggaacacctttcgttgaatattctatcctgcatatttatgctcttctacatctcct 1738
Query: 147 aaggagatgtccgaaataattggactgcagttctgaaacaggacaactatatgagtagtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 aaggagatgtccgaaataattggactgcagttctgaaacaggacaactatatgagtagtg 1678
Query: 207 tggtattggttttaatatgaacaatttttactaacaatagacatcatttcgatggcattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 tggtattggttttaatatgaacaatttttactaacaatagacatcatttcgatggcattt 1618
Query: 267 ttatttaggccggtattaaagcttacgaattgagaaccaagtccaaggaccaattggaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 ttatttaggccggtattaaagcttacgaattgagaaccaagtccaaggaccaattggaac 1558
Query: 327 aacaattggttgaattgaagaaggaattggccgaattgaaggttcaaaaattgtccagac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 aacaattggttgaattgaagaaggaattggccgaattgaaggttcaaaaattgtccagac 1498
Query: 387 catctttgccaaaaatcaacactgtcagaaagaacattgctcgtgtcttgactgttatct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 catctttgccaaaaatcaacactgtcagaaagaacattgctcgtgtcttgactgttatct 1438
Query: 447 ctcaaaaccaaagacaagctgtcagagaattgtacaagggtaagaagtaccaaccaaagg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 ctcaaaaccaaagacaagctgtcagagaattgtacaagggtaagaagtaccaaccaaagg 1378
Query: 507 acttgagagccaagaagaccagagctttgagaagagctttgaccaaattcgaagcttccc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 acttgagagccaagaagaccagagctttgagaagagctttgaccaaattcgaagcttccc 1318
Query: 567 aagttactgaaaagcaaagaaagaagcaaattgctttcccacaaagaaagtatgctatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 aagttactgaaaagcaaagaaagaagcaaattgctttcccacaaagaaagtatgctatca 1258
Query: 627 aggcttaagaaaccgttcttcctattacattattaagaacgttttttcatgttaaattag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 aggcttaagaaaccgttcttcctattacattattaagaacgttttttcatgttaaattag 1198
Query: 687 tttacatctttctacataatctctaacatcattgttgtatttgagtacacgcattttgca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 tttacatctttctacataatctctaacatcattgttgtatttgagtacacgcattttgca 1138
Query: 747 aaatagacacagggtttctgtttaatctcatgttagaatgatcctctgcatggaatcgaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 aaatagacacagggtttctgtttaatctcatgttagaatgatcctctgcatggaatcgaa 1078
Query: 807 cgccacttgctgtgtcactttaaga-tatattgacgaaa-tttttacctacatacttatt 864
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 1077 cgccacttgctgtgtcactttaagattatattgacgaaattttttacctacatacttatt 1018
Query: 865 ntagtggggtatgctattctttcttcgaacgcttagtattttctgaatt-caagatttnc 923
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct: 1017 ttagtggggtatgctattctttcttcgaacgcttag-attttctgaattccaagattttc 959
Query: 924 tcctttcactncacgttgggtattacctnctcaa 957
||||| ||| |||||||||||| |||| |||||
Sbjct: 958 tccttcaactccacgttgggtataacctcctcaa 925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7204
Number of Sequences: 1807
Number of extensions: 7204
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)