BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF08RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1629 0.0
>3x_Contig1676
Length = 15800
Score = 1629 bits (822), Expect = 0.0
Identities = 849/854 (99%), Gaps = 3/854 (0%)
Strand = Plus / Minus
Query: 48 tactaaagtctaactgatatttcttcttttaataaatacaagagtatttatttggcgaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256 tactaaagtctaactgatatttcttcttttaataaatacaagagtatttatttggcgaaa 12197
Query: 108 cagtttaaactatataccgaaaagaataactaagttgattatcttgtcaaattagaacgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 cagtttaaactatataccgaaaagaataactaagttgattatcttgtcaaattagaacgg 12137
Query: 168 cttgataaagactggatgtacttttgatatatctcagtatattttcccttctgttcagct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12136 cttgataaagactggatgtacttttgatatatctcagtatattttcccttctgttcagct 12077
Query: 228 gaatgttgaaggtgttgtagaatgtagatatcagtatccacagcggtggaagatagctgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 gaatgttgaaggtgttgtagaatgtagatatcagtatccacagcggtggaagatagctgg 12017
Query: 288 aaactgaacaaagataaatacagattcaaagcgacatattccaattttctaatatttaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 aaactgaacaaagataaatacagattcaaagcgacatattccaattttctaatatttaga 11957
Query: 348 agagtagtcagaaactttgctttgcgactctcgcaaaataaacctaaaactgaacaaact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 agagtagtcagaaactttgctttgcgactctcgcaaaataaacctaaaactgaacaaact 11897
Query: 408 gggtttttgtactgttttttctgagaactgtatcattatgcatgattttcatacgatagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 gggtttttgtactgttttttctgagaactgtatcattatgcatgattttcatacgatagg 11837
Query: 468 aacgcttcctgcagaaaacttcaggcaacagactcattttttacccgcctttagcgttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 aacgcttcctgcagaaaacttcaggcaacagactcattttttacccgcctttagcgttca 11777
Query: 528 acgcactagttatacttggaggtaagtcacatcgttgtaataattatcttttagtgtggt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 acgcactagttatacttggaggtaagtcacatcgttgtaataattatcttttagtgtggt 11717
Query: 588 ttgtgttaaagtgtgatttaatgcttatcgtgttcaatttaaactttcactgaatttcag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 ttgtgttaaagtgtgatttaatgcttatcgtgttcaatttaaactttcactgaatttcag 11657
Query: 648 gaattctttattgaataactatccataaatcgcattatctcaatcccttagaatacagaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11656 gaattctttattgaataactatccataaatcgcattatctcaatcccttagaatacagaa 11597
Query: 708 gaagaaagtacaaaaaatctatactaacacctgaatcggaagctagcaaattgttgaaca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11596 gaagaaagtacaaaaaatctatactaacacctgaatcggaagctagcaaattgttgaaca 11537
Query: 768 ttagaagtaattagaaaaataactgatttgatttcgattatttctac-attggtttttca 826
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 11536 ttagaagtaattagaaaaataactgatttgatttcgatta-ttctacaattggtttttca 11478
Query: 827 gaacattagtggactcgccaacaatttggcgtgatgttctgaaaagcttctta-aaaatg 885
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11477 gaacataggtggactcgccaacaatttggcgtgatgttctgaaaagcttcttagaaaatg 11418
Query: 886 ttgcatatgttact 899
||||||||||||||
Sbjct: 11417 ttgcatatgttact 11404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8047
Number of Sequences: 1807
Number of extensions: 8047
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)