BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZF12FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1360 1294 0.0
>3x_Contig1360
Length = 8285
Score = 1294 bits (653), Expect = 0.0
Identities = 686/693 (98%), Gaps = 3/693 (0%)
Strand = Plus / Minus
Query: 85 tatctctttcgataaaaacttcattgcccaaaatgagaggagatttagggagaatggacc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7778 tatctctttcgataaaaacttcattgcccaaaatgagaggagatttagggagaatggacc 7719
Query: 145 tcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccacttgtgg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7718 tcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccacttgtgg 7659
Query: 205 gtcttctaatttgttcgttgttttgacattgggtatcaatttcagacgtactttcttcat 264
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7658 gtcttctaatttgggcgttgttttgacattgggtatcaatttcagacgtactttcttcat 7599
Query: 265 atgcagttattaacgatgcaatatcttcattttcgttttcatactcatcttggatagcat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7598 atgcagttattaacgatgcaatatcttcattttcgttttcatactcatcttggatagcat 7539
Query: 325 tatcatttgcatcactttccattgaagttgcactcgtctccgttgcttctctattttgtg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7538 tatcatttgcatcactttccattgaagttgcactcgtctccgttgcttctctattttgtg 7479
Query: 385 gtgaacaggatctgtcatctgtcgaatcagatttctcgaaattgaacctacgaaggtcat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7478 gtgaacaggatctgtcatctgtcgaatcagatttctcgaaattgaacctacgaaggtcat 7419
Query: 445 taacattcagctttcttttcaaagttggggcagattccatgaaaatattactactccctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7418 taacattcagctttcttttcaaagttggggcagattccatgaaaatattactactccctt 7359
Query: 505 tatgttgactcaagatattcccagaagatgaaatatctgaaaatgcagagtcataagtga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7358 tatgttgactcaagatattcccagaagatgaaatatctgaaaatgcagagtcataagtga 7299
Query: 565 caatagaagtaatagagtctctttcaccgttatattctcctatgttgttcaggttatttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7298 caatagaagtaatagagtctctttcaccgttatattctcctatgttgttcaggttatttg 7239
Query: 625 caagtatggccttctttgtaggagagtttcttgtcggatcatggaaaaccaatctttttg 684
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7238 caagtatggccttctttgtaggagagttccttgtcggatcatggaaaaccaatctttttg 7179
Query: 685 gactgctgttgtcattggtattaggtagtcccattaaggcatttcttgatgctgtatctt 744
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 7178 gactgctgttgtcattggtattaggtagtcccattaaggca-ttcgtgatgctgtatc-t 7121
Query: 745 agaattattgtaagagtacacgcattggtgcag 777
|||||||||||||||||||| ||||||||||||
Sbjct: 7120 agaattattgtaagagtaca-gcattggtgcag 7089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7558
Number of Sequences: 1807
Number of extensions: 7558
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)