BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZF12RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1763                                                         585   e-167

>3x_Contig1763 
          Length = 22654

 Score =  585 bits (295), Expect = e-167
 Identities = 396/429 (92%), Gaps = 1/429 (0%)
 Strand = Plus / Plus

                                                                         
Query: 46    agcttgggtagatcctgctgtttttattaaatcccaatcgtaaatagaactattatggaa 105
             |||||||||||||||||||||  ||||||||||||||||||  || ||| ||||||||||
Sbjct: 21876 agcttgggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaa 21935

                                                                         
Query: 106   aattgaagtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccata 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21936 aattgaagtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccata 21995

                                                                         
Query: 166   ctgttttgttacacccaaatggacatcctgacatatttctaaatcacttttgncctaant 225
             ||||  || |||||||||  |||||||||||||||||||||||||||||||| ||  |  
Sbjct: 21996 ctgtaatgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatg 22055

                                                                         
Query: 226   tatacatccttcaactgcccctgtcccattaacatcatcgagagaaacacttttaaacga 285
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22056 tatacatccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacga 22115

                                                                         
Query: 286   aatgctttctaatgggaacatattaccagagggcattcctgccccaaggaacacgatatc 345
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 22116 aatgctttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatt 22175

                                                                         
Query: 346   gggatcgctaaaatattttatagctgccttgataggctaggccttattaatcttggtctc 405
              ||||||||||||||||| |||| || |||||||||| ||||||||  |||||||| |||
Sbjct: 22176 tggatcgctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctc 22235

                                                                         
Query: 406   attacttaataaatgtatcacattagtttctacagctcatatttttaactgtcattactg 465
             || ||| |||||||||| |||||||| ||||||||| ||||| |||||||||||||||||
Sbjct: 22236 atcactcaataaatgtaacacattag-ttctacagcccatatctttaactgtcattactg 22294

                      
Query: 466   taactaccc 474
             |||||||||
Sbjct: 22295 taactaccc 22303


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,527
Number of Sequences: 1807
Number of extensions: 11527
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)