BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC20ZF12RM1.SCF screened BAC_end (938 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1763 585 e-167 >3x_Contig1763 Length = 22654 Score = 585 bits (295), Expect = e-167 Identities = 396/429 (92%), Gaps = 1/429 (0%) Strand = Plus / Plus Query: 46 agcttgggtagatcctgctgtttttattaaatcccaatcgtaaatagaactattatggaa 105 ||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||| Sbjct: 21876 agcttgggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaa 21935 Query: 106 aattgaagtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccata 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21936 aattgaagtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccata 21995 Query: 166 ctgttttgttacacccaaatggacatcctgacatatttctaaatcacttttgncctaant 225 |||| || ||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 21996 ctgtaatgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatg 22055 Query: 226 tatacatccttcaactgcccctgtcccattaacatcatcgagagaaacacttttaaacga 285 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22056 tatacatccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacga 22115 Query: 286 aatgctttctaatgggaacatattaccagagggcattcctgccccaaggaacacgatatc 345 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22116 aatgctttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatt 22175 Query: 346 gggatcgctaaaatattttatagctgccttgataggctaggccttattaatcttggtctc 405 ||||||||||||||||| |||| || |||||||||| |||||||| |||||||| ||| Sbjct: 22176 tggatcgctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctc 22235 Query: 406 attacttaataaatgtatcacattagtttctacagctcatatttttaactgtcattactg 465 || ||| |||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| Sbjct: 22236 atcactcaataaatgtaacacattag-ttctacagcccatatctttaactgtcattactg 22294 Query: 466 taactaccc 474 ||||||||| Sbjct: 22295 taactaccc 22303 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,527 Number of Sequences: 1807 Number of extensions: 11527 Number of successful extensions: 98 Number of sequences better than 1.0e-20: 1 length of query: 938 length of database: 10,358,551 effective HSP length: 16 effective length of query: 922 effective length of database: 10,329,639 effective search space: 9523927158 effective search space used: 9523927158 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)