BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG01FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1600 0.0
>3x_Contig1672
Length = 13609
Score = 1600 bits (807), Expect = 0.0
Identities = 828/833 (99%), Gaps = 2/833 (0%)
Strand = Plus / Minus
Query: 86 atactcgtgctttgcaacaaggatgccgttgtatcgaaatagacatatggcaaggagatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6916 atactcgtgctttgcaacaaggatgccgttgtatcgaaatagacatatggcaaggagatc 6857
Query: 146 atgggcctgtggtatgccatggtcttttcacacagtcaatccccttagaagatgttgtta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6856 atgggcctgtggtatgccatggtcttttcacacagtcaatccccttagaagatgttgtta 6797
Query: 206 aaacgatacgaaaatatgcgtttatcacttcaccttatccgcttattgtatctctagaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6796 aaacgatacgaaaatatgcgtttatcacttcaccttatccgcttattgtatctctagaga 6737
Query: 266 tccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttgggag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6736 tccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttgggag 6677
Query: 326 atcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6676 atcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaatc 6617
Query: 386 gcattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6616 gcattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatcaa 6557
Query: 446 cttcatcctatacgtcttcttcctctcatgaatcactttctgaaacaaatgacatgcggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6556 cttcatcctatacgtcttcttcctctcatgaatcactttctgaaacaaatgacatgcggt 6497
Query: 506 taatcaagaagcggggcttacaaaaaagtactaccagtagcacttctccaaatacgacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6496 taatcaagaagcggggcttacaaaaaagtactaccagtagcacttctccaaatacgacaa 6437
Query: 566 cagttccagtgacaacaaagagaaacaacaaatcgttattgttatcaacaaagatcatga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6436 cagttccagtgacaacaaagagaaacaacaaatcgttattgttatcaacaaagatcatga 6377
Query: 626 tatcagacaaggttcatgaaatatctgggattcacggagtaagattcagaaacttttcgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6376 tatcagacaaggttcatgaaatatctgggattcacggagtaagattcagaaacttttcgt 6317
Query: 686 tgcctgaatcaaaaaccactacgcattgcttctcactaagtgagaagaagtttatcaatc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316 tgcctgaatcaaaaaccactacgcattgcttctcactaagtgagaagaagtttatcaatc 6257
Query: 746 ttgacanagatgaaactcaaaaactcgctatcaacaagcataaccgcagacatttaatga 805
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6256 ttgacaaagatgaaactcaaaaactcgctatcaacaagcataaccgcagacatttaatga 6197
Query: 806 gaatctatccgcacatgtttgcggtacaaatcctncaatttcaacccccatacgattttg 865
||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||||
Sbjct: 6196 gaatctatccgcacatg-ttgcggtacaaatcctccaatttcaa-cccaatacgattttg 6139
Query: 866 gaaagaaggagtacaaatggtcgcaacaaactggcagacgtatgacctgggac 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6138 gaaagaaggagtacaaatggtcgcaacaaactggcagacgtatgacctgggac 6086
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6484
Number of Sequences: 1807
Number of extensions: 6484
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)