BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG01RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig605 1667 0.0
>3x_Contig605
Length = 2275
Score = 1667 bits (841), Expect = 0.0
Identities = 892/910 (98%), Gaps = 1/910 (0%)
Strand = Plus / Minus
Query: 47 ttgataggtgtcgacgttggtggtacgaatagcgatttagtcgttcttgaccccactaga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ttgataggtgtcgacgttggtggtacgaatagcgatttagtcgttcttgaccccactaga 978
Query: 107 ctggggcaccccgatagaggggtattggcgtggcacaaatcagtgaccactcctgacgta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 ctggggcaccccgatagaggggtattggcgtggcacaaatcagtgaccactcctgacgta 918
Query: 167 tctgttgggatccaagctgctattaagactatcctagaaaatccaaacaaccatattgaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tctgttgggatccaagctgctattaagactatcctagaaaatccaaacaaccatattgaa 858
Query: 227 aagtcagaaatcgtttctgtcacaatcggtactactcatttcataaatgccgtcattgaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aagtcagaaatcgtttctgtcacaatcggtactactcatttcataaatgccgtcattgaa 798
Query: 287 cgtgattcgagcagattggaaaaggttgcagtcatcagattgtccggtccctatggtaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgtgattcgagcagattggaaaaggttgcagtcatcagattgtccggtccctatggtaga 738
Query: 347 catatgcccccatttggcgattttcctgaggatttggccgagatcatcaatggatattac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catatgcccccatttggcgattttcctgaggatttggccgagatcatcaatggatattac 678
Query: 407 tgtactcttgacggtggttgtagagtggatggtaaggatatcaagcctttggatgaagac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtactcttgacggtggttgtagagtggatggtaaggatatcaagcctttggatgaagac 618
Query: 467 ggtttgagaaaagaatgtgctaatatcaaaacattgggtataactgcagtggcggttgtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggtttgagaaaagaatgtgctaatatcaaaacattgggtataactgcagtggcggttgtt 558
Query: 527 gccacatttgccaatattaacaatgatcatgaattgagagctacaaagattataaaggaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccacatttgccaatattaacaatgatcatgaattgagagctacaaagattataaaggaa 498
Query: 587 gcgttaccgaatgtcgatgtagttatgtctcatacaatttctggcttgngtttcatagaa 646
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 gcgttaccgaatgtcgatgtagttatgtctcatacaatttctggcttgggtttcatagaa 438
Query: 647 agggagaacgcttctatattgaacgcttccattaaaaaatttggtcgtaaaattatcaaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agggagaacgcttctatattgaacgcttccattaaaaaatttggtcgtaaaattatcaaa 378
Query: 707 tctttcatccatgccactaangaaattggcttanattgtactgtactattatcccaaaac 766
|||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 377 tctttcatccatgcaactaaggaaattggcttaaattgtactgtactattatcccaaaac 318
Query: 767 gatggtaccgttctctctactaaggatgccctggagactncaatcagaaacgtctctttc 826
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 317 gatggtaccgttctctctactaaggatgccctggagactccaatcagaacgttctcttca 258
Query: 827 agtgcaactaactcaatgaggggcgctgncattctatgttctgatgaccctgatgtt-aa 885
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 257 ggtgcaactaactcaatgaggggcgctgccattctatgttctgatgaccctgatgttaaa 198
Query: 886 aaccaatctgtcatagtctgtgatatcgggcgcaccacctcgnatgtgggtcagntacta 945
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 197 aacaaatctgtcatagtctgtgatatcggcggcaccacctcggatgtgggtcagttacta 138
Query: 946 ccgtctgggt 955
||||||||||
Sbjct: 137 ccgtctgggt 128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5228
Number of Sequences: 1807
Number of extensions: 5228
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)