BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig472 1477 0.0
>3x_Contig472
Length = 1547
Score = 1477 bits (745), Expect = 0.0
Identities = 748/749 (99%)
Strand = Plus / Minus
Query: 85 tttgacactttttctcgattcaagtgaagtccgcgttttctcttttttctcatagtcatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttgacactttttctcgattcaagtgaagtccgcgttttctcttttttctcatagtcatt 690
Query: 145 atatgtaaacgttccgtaatttgaagtcatcaacatcttctctagttcctcttctggaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atatgtaaacgttccgtaatttgaagtcatcaacatcttctctagttcctcttctggaat 630
Query: 205 ctgtgtacctttattcataccggcaccaattgaatgtagaattacagctctaaaaggtgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctgtgtacctttattcataccggcaccaattgaatgtagaattacagctctaaaaggtgg 570
Query: 265 ccaccaagtatggaattcgttacaccattgtttcatcacagttgcgggacaaacgacaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccaccaagtatggaattcgttacaccattgtttcatcacagttgcgggacaaacgacaag 510
Query: 325 tacagggccattcaattttcgggagtggtgcaaagtggcaagaaatgcaataatttgaat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tacagggccattcaattttcgggagtggtgcaaagtggcaagaaatgcaataatttgaat 450
Query: 385 cgttttacctagtcccatctcatctcctattatgccaccgcatccttgttgataaagctc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cgttttacctagtcccatctcatctcctattatgccaccgcatccttgttgataaagctc 390
Query: 445 acatagccattgcacacatgttttttgatagggaaatagcaaagggaatatatcaccagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acatagccattgcacacatgttttttgatagggaaatagcaaagggaatatatcaccagg 330
Query: 505 taccatgaaatcttcactgatattggcgtctgaaatttttggatgtggtttcaaccattc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taccatgaaatcttcactgatattggcgtctgaaatttttggatgtggtttcaaccattc 270
Query: 565 tggaatatccggttggttatcgtaatcgcgatctttacttctattggctacccacttctt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggaatatccggttggttatcgtaatcgcgatctttacttctattggctacccacttctt 210
Query: 625 taatctttgttgataatgatgctcgtcaccgtcatcaatagcctctgcaggtttacgaat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taatctttgttgataatgatgctcgtcaccgtcatcaatagcctctgcaggtttacgaat 150
Query: 685 tacatcgagtttcccagctgattcgtttaaaagttcttctgaatcacttataaaatcagc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tacatcgagtttcccagctgattcgtttaaaagttcttctgaatcacttataaaatcagc 90
Query: 745 ctcgtcttcactttgatcttcttcctcgtcaatgttctttaacatttgtcgttcagctag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctcgtcttcactttgatcttcttcctcgtcaatgttctttaacatttgtcgttcagctag 30
Query: 805 taagaatgatttagattcttcttcgtctt 833
||||| |||||||||||||||||||||||
Sbjct: 29 taagattgatttagattcttcttcgtctt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7467
Number of Sequences: 1807
Number of extensions: 7467
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)