BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG02RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1703 0.0
>3x_Contig1521
Length = 8057
Score = 1703 bits (859), Expect = 0.0
Identities = 904/916 (98%), Gaps = 3/916 (0%)
Strand = Plus / Plus
Query: 41 gctttataatggtaatccagaatgcattggaagctaaattgaaagaaaagataggttatc 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5977 gctttataatggtaatccagaatgcattggaagctaaattgaaagaaaagataggttatc 6036
Query: 101 atagttctgatggtcaatcgctcttggaaattaccaagaaattaagatcatcgatcgtac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6037 atagttctgatggtcaatcgctcttggaaattaccaagaaattaagatcatcgatcgtac 6096
Query: 161 aagatttggatcttctacgagtgaacaaccatgggacggacttcccaaaagcttttttta 220
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 6097 aagatttggatcttctacgagtgaacaaccatgggacggacttcccaaaagcatttctta 6156
Query: 221 aagtagtttggcaccagctattggaaaagcacatggttcctggacctaaggacactatca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6157 aagtagtttggcaccagctattggaaaagcacatggttcctggacctaaggacactatca 6216
Query: 281 taagattgccgagtgtgacgcaattcgaggaagagacaattctatcttcttacgtcaaag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217 taagattgccgagtgtgacgcaattcgaggaagagacaattctatcttcttacgtcaaag 6276
Query: 341 atgttgatttagagataatcgagaatagtccagtaggcgctttgctagagctgaaggatg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6277 atgttgatttagagataatcgagaatagtccagtaggcgctttgctagagctgaaggatg 6336
Query: 401 gaaagggtttaaaagatatgatagacgggattctatcgaatagggaaagtgagcaaacaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6337 gaaagggtttaaaagatatgatagacgggattctatcgaatagggaaagtgagcaaacaa 6396
Query: 461 agtttctcaaagatttaaaattatcagagcaatgcagaatgaagagcctgtcgtatgaaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6397 agtttctcaaagatttaaaattatcagagcaatgcagaatgaagagcctgtcgtatgaaa 6456
Query: 521 tgaatttctatatcaatattgaagataaacagggaaaccttgattcatgtataagtcaag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6457 tgaatttctatatcaatattgaagataaacagggaaaccttgattcatgtataagtcaag 6516
Query: 581 aatttgataacattggcttatctgattcaggcaataacagtgatagtacattattcgaaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6517 aatttgataacattggcttatctgattcaggcaataacagtgatagtacattattcgaaa 6576
Query: 641 ctgtacatactagattgccccttacgctaaaacatttgaaagaagtgaaggtaacattat 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 ctgtacatactagattgccccttacgctaaaacatttgaaagaagtgaaggtaacattat 6636
Query: 701 taccttcagttaaatttgacaaacaatgggaaatgcttcattatgactccaatttaaagg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 taccttcagttaaatttgacaaacaatgggaaatgcttcattatgactccaatttaaagg 6696
Query: 761 anaagatgtactcgcatggtatttcatcgctcaagctaagccacctattagaanaatgta 820
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6697 aaaagatgtactcgcatggtatttcatcgctcaagctaagccacctattagaaaaatgta 6756
Query: 821 aaacgaanatccgtaagaataacttattcttgttacatggaccgccggggactgggtaga 880
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 6757 aaacgaaaatccgtaagaataacttattcttgttacatggaccgccgggaactggtaaga 6816
Query: 881 ctacattatgcaaatcattttgcccaaaaacttgctttacgggaatggtaatattgttcg 940
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct: 6817 ctacattatgcaaatcattttg-ccaaaaacttgctttac-ggaattgtaat-ttgttcg 6873
Query: 941 atagtggccattctgg 956
||||||||||||||||
Sbjct: 6874 atagtggccattctgg 6889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7246
Number of Sequences: 1807
Number of extensions: 7246
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)