BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG03FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1530 0.0
>3x_Contig1743
Length = 20172
Score = 1530 bits (772), Expect = 0.0
Identities = 833/846 (98%), Gaps = 6/846 (0%)
Strand = Plus / Minus
Query: 87 cgttacgattgcgtaaggtgatactaaaactccgtattccagctgaagggaacctttgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18855 cgttacgattgcgtaaggtgatactaaaactccgtattccagctgaagggaacctttgat 18796
Query: 147 tccctttcatttcaccaaaccggttcacggcatagtttaaagtccgtatactggatatgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18795 tccctttcatttcaccaaaccggttcacggcatagtttaaagtccgtatactggatatgg 18736
Query: 207 gcagtgacaatctatcatcaaaccgccttgtgatggataaaagcggattagaaagagcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18735 gcagtgacaatctatcatcaaaccgccttgtgatggataaaagcggattagaaagagcaa 18676
Query: 267 gcaatcctcgtcctcgtcctatgctgccacgtaaccccaaaacaggtttcaacattctgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18675 gcaatcctcgtcctcgtcctatgctgccacgtaaccccaaaacaggtttcaacattctgc 18616
Query: 327 actgacgtaattcaatatttatagcgtgcaattataaccattcaaaatagaagcattaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18615 actgacgtaattcaatatttatagcgtgcaattataaccattcaaaatagaagcattaca 18556
Query: 387 cttgataacctcctgtttggattcaataacttaaatatagctttcgtcaatttaacttct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18555 cttgataacctcctgtttggattcaataacttaaatatagctttcgtcaatttaacttct 18496
Query: 447 gaacttatcctgtaacggaatcgacattgactcttttttctcaattttcatgtccgtgct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18495 gaacttatcctgtaacggaatcgacattgactcttttttctcaattttcatgtccgtgct 18436
Query: 507 tttcaccatactaaacgcttatccggaagaaccgggtaatgcatttttctcggtgaatat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18435 tttcaccatactaaacgcttatccggaagaaccgggtaatgcatttttctcggtgaatat 18376
Query: 567 agtaagtcttaaaatctttatatactatgtgaattttattttatatatcgatacatcgtc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18375 agtaagtcttaaaatctttatatactatgtgaattttattttatatatcgatacatcgtc 18316
Query: 627 aatcttcaacgggtgaaaatgatgatcagtgtttatgggacgtgaattgattcataacga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18315 aatcttcaacgggtgaaaatgatgatcagtgtttatgggacgtgaattgattcataacga 18256
Query: 687 gacactagtcatatggggagcgaaaattcctttgtagtaatgaggattggccctaataat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18255 gacactagtcatatggggagcgaaaattcctttgtagtaatgaggattggccctaataat 18196
Query: 747 ttcccctttctcatgagggtgtcgcagacaaatggcttc-aaaaaaggccttcttctctt 805
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 18195 ttcccctttctcatgagggtgtcgcaga-aaatggcttcaaaaaaaggccttcttctctt 18137
Query: 806 ct-atacgtgtttgaaagttgagagac-atatag-aatatgcagtgtctatcactttatt 862
|| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 18136 ctaatacgtgtttgaaagttgagagacaatatagaaatatgaagtgtctatcactttatt 18077
Query: 863 atttctttagtgggactggttcagaagc-acaccattntcaaacttaatgaaactggctt 921
|||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 18076 atttatttagtggaactggttcagaagcaacaccattttcaaacttaatgaacttggctt 18017
Query: 922 canatt 927
|| |||
Sbjct: 18016 cagatt 18011
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6091
Number of Sequences: 1807
Number of extensions: 6091
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)