BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG03RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1699 0.0
>3x_Contig1487
Length = 9002
Score = 1699 bits (857), Expect = 0.0
Identities = 884/889 (99%), Gaps = 3/889 (0%)
Strand = Plus / Plus
Query: 44 gctttacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7397 gctttacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaag 7456
Query: 104 ttagaaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7457 ttagaaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagat 7516
Query: 164 tcatttcagtgctgttactagacatcaattttaagacgattgctctaatttgatatgtga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7517 tcatttcagtgctgttactagacatcaattttaagacgattgctctaatttgata-gtga 7575
Query: 224 aatataaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaact 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7576 aatataaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaact 7635
Query: 284 tttggcgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7636 tttggcgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagta 7695
Query: 344 gagggttttggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7696 gagggttttggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgc 7755
Query: 404 tgaagagcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 tgaagagcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaac 7815
Query: 464 ggaaatcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaaga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7816 ggaaatcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaaga 7875
Query: 524 acctgaaacgcctttcaataggatccatggatctactaatggatcctgaattggaatacc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 acctgaaacgcctttcaataggatccatggatctactaatggatcctgaattggaatacc 7935
Query: 584 gtgtatcatcacgacaaggaacaggaacagcaacggatcaagatacaggaacgccctaca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 gtgtatcatcacgacaaggaacaggaacagcaacggatcaagatacaggaacgccctaca 7995
Query: 644 tcgctacctcgtcgataaaaactgaaactactaaatcagaacaaggggaacaagagtatg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 tcgctacctcgtcgataaaaactgaaactactaaatcagaacaaggggaacaagagtatg 8055
Query: 704 gaaatgatgataatcaggaaacacaattgtctcattcaagtttgagtgaggatgatacta 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 gaaatgatgataatcaggaaacacaattgtctcattcaagtttgagtgaggatgatacta 8115
Query: 764 ccactgctggggcagcagttgaagaaga-gatgatagttattcttttacagatgatagca 822
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8116 ccactgctggggcagcagttgaagaagaggatgatagttattcttttacagatgatagca 8175
Query: 823 tggacgttacaaatgccgagtacttggataaagacgctcaggcaaatatgataaataata 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 tggacgttacaaatgccgagtacttggataaagacgctcaggcaaatatgataaataata 8235
Query: 883 a-tatcggcatgagccactttcagggaggagagtactcagcggatccat 930
| |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 8236 attatcggcatgagccacttccaaggaggagagtactcagcggatccat 8284
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)