BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG04RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1645 0.0
>3x_Contig1488
Length = 9807
Score = 1645 bits (830), Expect = 0.0
Identities = 895/908 (98%), Gaps = 7/908 (0%)
Strand = Plus / Plus
Query: 44 gcttgttgaaagagaggtgagaactagttac-catcgtttcaccttctcaccgatcttca 102
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5192 gcttgttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttca 5251
Query: 103 aaaagacaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 aaaagacaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtca 5311
Query: 163 tgggatgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 tgggatgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaa 5371
Query: 223 tgctttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgcta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 tgctttctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgcta 5431
Query: 283 aatttttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgcca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5432 aatttttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgcca 5491
Query: 343 tatgatacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5492 tatgatacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaatt 5551
Query: 403 gagttaacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5552 gagttaacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgttt 5611
Query: 463 caatatgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgacta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 caatatgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgacta 5671
Query: 523 cggatgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 cggatgaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgc 5731
Query: 583 tcagttttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 tcagttttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctc 5791
Query: 643 tgatctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacct 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 tgatctgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacct 5851
Query: 703 ccaatattcttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagcat 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 ccaatattcttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagcat 5911
Query: 763 gggtaaaatgtctactgactaacttgaaatcattacccaatntgacatacacatcggaaa 822
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5912 gggtaaaatgtctactgactaacttgaaatcattacccaattgaacatacacatcggaaa 5971
Query: 823 cattacgctcgggtactttgcccttgga-cattgcgtcagaa-ttgtaatagttgtttag 880
|||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 5972 cattacgctcggtaactttgcccttggaccattgcgtcagaatttgtaatagttgtttag 6031
Query: 881 ttgaaatc-atagtttcgtc-cactagtttccac-gntgatgctgatttagaaa-tggtg 936
|||||||| ||||||||||| ||||||||||||| | ||||||||||||||||| |||||
Sbjct: 6032 ttgaaatcaatagtttcgtcacactagtttccacagatgatgctgatttagaaattggtg 6091
Query: 937 gtggtgtt 944
||||||||
Sbjct: 6092 gtggtgtt 6099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6837
Number of Sequences: 1807
Number of extensions: 6837
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)