BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG06FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1522 0.0
>3x_Contig1801
Length = 57606
Score = 1522 bits (768), Expect = 0.0
Identities = 811/819 (99%), Gaps = 5/819 (0%)
Strand = Plus / Plus
Query: 86 cctacgaattcatcaaaccgttggccgtgagagctgccatgaatgcgttcccatacgcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36748 cctacgaattcatcaaaccgttggccgtgagagctgccatgaatgcgttcccatacgcca 36807
Query: 146 aatatttctggttcttcgaccaaaacgggctaataatgcaacttgacacttccttacaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36808 aatatttctggttcttcgaccaaaacgggctaataatgcaacttgacacttccttacaac 36867
Query: 206 aacaactattggaaccaaaggtattggatgcagctgtcttgaaaagcgttccagtgttcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36868 aacaactattggaaccaaaggtattggatgcagctgtcttgaaaagcgttccagtgttcg 36927
Query: 266 agaagtcgaacatcaagacctacaaacacttcgatgcaaagaccgctaaaatcattatac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36928 agaagtcgaacatcaagacctacaaacacttcgatgcaaagaccgctaaaatcattatac 36987
Query: 326 caaaaaccggtgcggggaaactggacacctccagtttcgtcgttactcccagtatacacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36988 caaaaaccggtgcggggaaactggacacctccagtttcgtcgttactcccagtatacacg 37047
Query: 386 gtaaagcgttcctagattacataaacgacccattggtgagaaactacccatggccatcct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37048 gtaaagcgttcctagattacataaacgacccattggtgagaaactacccatggccatcct 37107
Query: 446 cgttcactagcgcgatcgggcacttgctacaatggcatccaagaatactaaagagaaccg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37108 cgttcactagcgcgatcgggcacttgctacaatggcatccaagaatactaaagagaaccg 37167
Query: 506 cattggtggtacccaagactattgcctccgtgtacagtccctcagcagttaaaaaacaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37168 cattggtggtacccaagactattgcctccgtgtacagtccctcagcagttaaaaaacaag 37227
Query: 566 cggacgatgcagaaaggttcaattatatggacggagacttcgtcatcacgtttactggat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37228 cggacgatgcagaaaggttcaattatatggacggagacttcgtcatcacgtttactggat 37287
Query: 626 gtgaagcgtccaaaacttgtgagatagaactggacaaacattatcagctagttaagcagg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37288 gtgaagcgtccaaaacttgtgagatagaactggacaaacattatcagctagttaagcagg 37347
Query: 686 actgaaccaactctcatatacttttgtattcattcttctatatagaacttataactataa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37348 actgaaccaactctcatatacttttgtattcattcttctatatagaacttataactataa 37407
Query: 746 tcactattatttcc-aaaatnctgccgatgttg-ccctgc-aaaacttcacac-aaacta 801
|||||||||||||| ||||| |||||||||||| |||||| |||||||||||| ||||||
Sbjct: 37408 tcactattatttccaaaaatcctgccgatgttgcccctgcaaaaacttcacacaaaacta 37467
Query: 802 gtgcacggaagaacaattcgaagcatgttcgcagcatcttgcaccaaacattatcctgct 861
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 37468 gtgcacggaagaacaattcgaagcatgttcgcagcatcttgcagcaaactttatcctgct 37527
Query: 862 gtcacattgttcttaaacctttttcgttcgaggacgcga 900
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 37528 gtcaca-tgttcttaaacctttttcgttcgaggacgcga 37565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5382
Number of Sequences: 1807
Number of extensions: 5382
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)