BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1618 0.0
>3x_Contig1512
Length = 8803
Score = 1618 bits (816), Expect = 0.0
Identities = 881/895 (98%), Gaps = 6/895 (0%)
Strand = Plus / Minus
Query: 48 ctcttctttctctgggttcttaagaatcaaatttatcgtttataatacgctctatgtggt 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5951 ctcttctttctctgggttcataagaatcaaatttatcgtttataatacgctctatgtggt 5892
Query: 108 tcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatggtgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5891 tcatcttggtaagtatccttaaccgtgtctcctctgaatacatcaaattaaacatggtgt 5832
Query: 168 cccttatctttggatgtaacgatattacaaaagtccatccggcacataaaaagatgaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 cccttatctttggatgtaacgatattacaaaagtccatccggcacataaaaagatgaatt 5772
Query: 228 tccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaatagca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 tccaaggtattagcgaggaaatactatcaatagctagcgaattgatacaagagaatagca 5712
Query: 288 gtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaacttagcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5711 gtagtcctagaaatacggccgaactgacattctcgttcttaaagtatgcaaacttagcca 5652
Query: 348 aaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaagtcag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5651 aaaaattcgatacgaaatcgtatgccatcacatataacgtcatatggttctgcaagtcag 5592
Query: 408 ttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtggatttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5591 ttaagtttaatatgaactccttgctaaactctggaacaggacctggcaattgtggatttt 5532
Query: 468 tcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatcaggct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5531 tcaacggaggcccgcgagcaggaattgggttatgatctaagttcatgtgaggatcaggct 5472
Query: 528 tatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaaggacccg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 tatgtatatccatatacgttggtgacatgatgccaaatagaatgtacacgaaaggacccg 5412
Query: 588 atacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcataaag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 atacaagcactggtaatggtttcaacactagaaacgaatagaatgacattatgcataaag 5352
Query: 648 tataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaatgggg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 tataagctgcattagtccaattgaagatccttattatctcatcaatgatcatgaatgggg 5292
Query: 708 cgccaagcctcgaattcatctgcacgaagttcctactcatttatc-gcacagacaaagcc 766
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 5291 cgccaagcctcgaattcatctgcacgaagttcctactca-ttatcggcacagac-aagcc 5234
Query: 767 a-gtctttctgcacctgcctgtaccctattctctat-gtatcagtagccagatcattaga 824
| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5233 aggtcttcctgcacctgcctgtaccctattctctatagtatcagtagccagatcattaga 5174
Query: 825 ggcanggcatgccatatttatattcttctcaacaagcttgtcattt-acaggctctgagt 883
|||| | ||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 5173 ggcaggcaatgccatatatataatcttctcaacaagcttgtcatttaacaggctctgagt 5114
Query: 884 gctttgcgatggcctggtatcagaccgccccgttgtgctcttccagatcgcatcc 938
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 gctttgcgatgggctggtatcagaccgccccgttgtgctcttccagatcgcatcc 5059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5582
Number of Sequences: 1807
Number of extensions: 5582
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)