BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG08FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1677 1566 0.0
>3x_Contig1677
Length = 15081
Score = 1566 bits (790), Expect = 0.0
Identities = 834/845 (98%), Gaps = 3/845 (0%)
Strand = Plus / Minus
Query: 86 aaacgcggcgctgggtttgataatcctagaggggaaaaattgtgttagggcgtcgtttcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7868 aaacgcggcgctgggtttgataatcctagaggggaaaaattgtgttagggcgtcgtttcg 7809
Query: 146 tttcagtgtaccggacatagagcatatattttataattgagtaggttctgcagagaacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7808 tttcagtgtaccggacatagagcatatattttataattgagtaggttctgcagagaacaa 7749
Query: 206 agacaaaaaaaaaagggatgtatcggtcagtcattaatactaggaacaagagaaaggaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7748 agacaaaaaaaaaagggatgtatcggtcagtcattaatactaggaacaagagaaaggaaa 7689
Query: 266 aacgttcattgttccttattcaagcagctcttcttctcttttggccgttgtttttttcct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7688 aacgttcattgttccttattcaagcagctcttcttctcttttggccgttgtttttttcct 7629
Query: 326 cgaaactgcgatctggctcatgcagacgtgaattccgaagctcttcaatttgtgagtcgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7628 cgaaactgcgatctggctcatgcagacgtgaattccgaagctcttcaatttgtgagtcgc 7569
Query: 386 cataatcagaaggttgttcggattgccccgagccgcctgtgttggcgaaataggaaggca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7568 cataatcagaaggttgttcggattgccccgagccgcctgtgttggcgaaataggaaggca 7509
Query: 446 tgttcagctctgggaaaataggagtgtttccgtcctctccaggaccggggttgagcttag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7508 tgttcagctctgggaaaataggagtgtttccgtcctctccaggaccggggttgagcttag 7449
Query: 506 taatccagtcttgaatctcttggatagattcctcttgtttgtcgatattattttgtaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7448 taatccagtcttgaatctcttggatagattcctcttgtttgtcgatattattttgtaaat 7389
Query: 566 cttggaaaaacgccggatcaggcgaatcagagctgacgatactaggcgtaagttctctaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7388 cttggaaaaacgccggatcaggcgaatcagagctgacgatactaggcgtaagttctctaa 7329
Query: 626 tttctccgttactaccatggtgcaacgctggacgtgaagtttgctgctgtaactgattgc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7328 tttctccgttactaccatggtgcaacgctggacgtgaagtttgctgctgtaactgattgc 7269
Query: 686 cgaattggttactgtattggtttccatactggttaccgtattgacttccaactggacttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7268 cgaattggttactgtattggtttccatactggttaccgtattgacttccaactggacttc 7209
Query: 746 caacttgagttccaatagggctccccagttggttcatcatttgatttccaccctggattg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7208 caacttgagttccaatagggctccccagttggttcatcatttgatttccaccctggattg 7149
Query: 806 gatacgagaattgttgtcctttggggtgtcctttgttgttgttg-tggtggtgttgctgc 864
||||||||||||||||||||| || ||||| |||||||||||| || || |||||||||
Sbjct: 7148 gatacgagaattgttgtccttgtggttgtcc-ttgttgttgttgttgttgttgttgctgc 7090
Query: 865 tgnggtggaagtgattgtccgacaattcta-tttgtggcgactgcctttgattgagatta 923
|| |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 7089 tgtggtggaggtgattgtccgacaatcctattttgtggcgactgcctttgattgagatta 7030
Query: 924 gacga 928
|||||
Sbjct: 7029 gacga 7025
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7667
Number of Sequences: 1807
Number of extensions: 7667
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)