BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1667 0.0
3x_Contig943 317 2e-86
>3x_Contig1682
Length = 16889
Score = 1667 bits (841), Expect = 0.0
Identities = 889/900 (98%), Gaps = 4/900 (0%)
Strand = Plus / Minus
Query: 43 gctttgaataa-tgtccctctcttatgtgtatttggtttttcataaggatatctttcgtt 101
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2533 gctttgaataaatgtccctctctcaagtgtatttggtttttcataaggatatctttcgtt 2474
Query: 102 taatgattctatcaaagaaaggtattaagtttggtttggtattataagttgtgtgaagcg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2473 taatgattctatcaaagaaaggtattaagtttggtttggtattataagttgtgtgaagcg 2414
Query: 162 ttttgttttgttatgtttaatcaacttcttcaacggttggaccttcagcttctggatctg 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2413 ttttgttttgttatgtttaatcaacttcttcaacggttggaccttcagcttctggagctg 2354
Query: 222 gaggagcaccacctgggaaaccacctggagcggcaccacctggagcaccaccggcttggt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 gaggagcaccacctgggaaaccacctggagcggcaccacctggagcaccaccggcttggt 2294
Query: 282 acatcttggtcatgattgggttcgcgacttcttgcaattccttcaattgagattcgaatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2293 acatcttggtcatgattgggttcgcgacttcttgcaattccttcaattgagattcgaatt 2234
Query: 342 cttcggtagtagcttgagtgttggcatccaaccaagcgataacttcgtcacacttagcag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 cttcggtagtagcttgagtgttggcatccaaccaagcgataacttcgtcacacttagcag 2174
Query: 402 tcaaagtttccttgtcagcttcttcgatcttgtcagcggcttcagacaaagtgttcttca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 tcaaagtttccttgtcagcttcttcgatcttgtcagcggcttcagacaaagtgttcttca 2114
Query: 462 aagagtaagaagtggattccaattggtttctagcggcaattctggaagattccttttcat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 aagagtaagaagtggattccaattggtttctagcggcaattctggaagattccttttcat 2054
Query: 522 cttcttccttgtatttttcagcttcagaaaccattctttcgatatcttccttagacaatc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 cttcttccttgtatttttcagcttcagaaaccattctttcgatatcttccttagacaatc 1994
Query: 582 tacccttgtcgttagtgatggtaatcttttcagatttaccagtacccttttcaacggcag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 tacccttgtcgttagtgatggtaatcttttcagatttaccagtacccttttcaacggcag 1934
Query: 642 aaacgttcaagataccgttagcatcgacatcgaaagtaacttcgatttgtgggacacctc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 aaacgttcaagataccgttagcatcgacatcgaaagtaacttcgatttgtgggacacctc 1874
Query: 702 ttggagctggtgggataccagtcaagtcgaacttacctaacaagttgttgtcctttgttc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 ttggagctggtgggataccagtcaagtcgaacttacctaacaagttgttgtcctttgttc 1814
Query: 762 tagctctttcaccttcgtaaacttggatcaagacacctggttggttatcagcgtatgtgg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tagctctttcaccttcgtaaacttggatcaagacacctggttggttatcagcgtatgtgg 1754
Query: 822 agaagatttcagacttcttagttggaatggtagagtttcta-gaatcaacttgntcatga 880
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1753 agaagatttcagacttcttagttggaatggtagagtttctaggaatcaacttggtcatga 1694
Query: 881 ca-caacagcagtttcaatacccaaggacaatggagcaacattccac-acaacaaatctt 938
|| || |||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 1693 caccaccagcagtttcaatacccaaggacaatggagcaacatccaacaacaacaaatctt 1634
>3x_Contig943
Length = 2708
Score = 317 bits (160), Expect = 2e-86
Identities = 347/407 (85%), Gaps = 2/407 (0%)
Strand = Plus / Minus
Query: 517 ttcatcttcttccttgtatttttcagcttcagaaaccattctttcgatatcttccttaga 576
||||||||| ||||| | || || ||||| || ||||||||||| ||||||||||| ||
Sbjct: 1732 ttcatcttcgaccttgaacttctcggcttctgacaccattctttcaatatcttccttgga 1673
Query: 577 caatctacccttgtcgttagtgatggtaatcttttcagatttaccagtacccttttcaac 636
||||||||||| ||||||||||| |||||||| | ||||| |||||||| || |
Sbjct: 1672 taatctacccttatcgttagtgatagtaatcttgctggtcttaccggtacccttctctag 1613
Query: 637 ggcagaaacgttcaagataccgttagcatcgacatcgaaagtaacttcgatttgtgggac 696
|| |||||||||||||||||||||||||||| ||| || || |||||||||||||||||
Sbjct: 1612 agcggaaacgttcaagataccgttagcatcgatatcaaaggtgacttcgatttgtgggac 1553
Query: 697 acctcttggagctggtgggataccagtcaagtcgaacttacctaacaagttgttgtcctt 756
||||||||| |||||||||||||||| ||| || |||||||| || |||||||| |||||
Sbjct: 1552 acctcttggtgctggtgggataccagacaactcaaacttacccaataagttgttatcctt 1493
Query: 757 tgttctagctctttcaccttcgtaaacttggatcaagacacctggttggttatcagcgta 816
||| | | |||||||||||| | ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 1492 tgtctttgttctttcaccttcaaacacttgaatcaacacaccaggttggttatcagcata 1433
Query: 817 tgtggagaagatttcagacttcttagttggaatggtagagtttc-tagaatcaacttgnt 875
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |
Sbjct: 1432 agtggagaagatttcagacttcttggttggaatggtagagtttcttggaatcaacttcgt 1373
Query: 876 catgaca-caacagcagtttcaatacccaaggacaatggagcaacat 921
||||| | || | || |||||||||||||| |||||||||| |||||
Sbjct: 1372 catgataccaccggcggtttcaatacccaaagacaatggagtaacat 1326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8169
Number of Sequences: 1807
Number of extensions: 8169
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)