BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG09FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig668 1620 0.0
>3x_Contig668
Length = 3128
Score = 1620 bits (817), Expect = 0.0
Identities = 861/872 (98%), Gaps = 3/872 (0%)
Strand = Plus / Plus
Query: 87 tctcattaagcaagcgttgtctgatttgaaagtatttcgtaaaaccttagaaaaggttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tctcattaagcaagcgttgtctgatttgaaagtatttcgtaaaaccttagaaaaggttga 447
Query: 147 aattcaacaatatttaacaggttctctgtaaatgaaaacccaatctccgatagtggtgcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aattcaacaatatttaacaggttctctgtaaatgaaaacccaatctccgatagtggtgcc 507
Query: 207 cagaacatccgttggatttcagagtagattcgattgtataaacttccggttacatagtgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cagaacatccgttggatttcagagtagattcgattgtataaacttccggttacatagtgc 567
Query: 267 atgttagagtctgtgttgggccgtatactccctgattcactgaccttattgttcgaaaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgttagagtctgtgttgggccgtatactccctgattcactgaccttattgttcgaaaac 627
Query: 327 ttacacatcttacagcagcctcggtgtagatttaaggctcgactatatctattgaaatct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttacacatcttacagcagcctcggtgtagatttaaggctcgactatatctattgaaatct 687
Query: 387 actacttacttcaattaagccgagagagagagagaacttgctttggtttctttgactgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 actacttacttcaattaagccgagagagagagagaacttgctttggtttctttgactgtt 747
Query: 447 tgatccactatagtgagtattattgttttattttataatatcaagtgctctgtagttcaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgatccactatagtgagtattattgttttattttataatatcaagtgctctgtagttcaa 807
Query: 507 ggttattcgtcatgagcgcactggtacggcactcaccgttgatagggttggggttccttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ggttattcgtcatgagcgcactggtacggcactcaccgttgatagggttggggttccttc 867
Query: 567 aaagcaccgtttaccctaaaaaggtcacgtgttatttttcgacttgcatgtggaaatgtc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aaagcaccgtttaccctaaaaaggtcacgtgttatttttcgacttgcatgtggaaatgtc 927
Query: 627 attcgagcattggaaaagttattggtataagaacgacgtcgatgaggacaacggtaccaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 attcgagcattggaaaagttattggtataagaacgacgtcgatgaggacaacggtaccaa 987
Query: 687 cgagaaggatctgttcaagcggtagattgttgttacagtttggttctcgagcaagacag- 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 cgagaaggatctgttcaagcggtagattgttgttacagtttggttctcgagcaagacaga 1047
Query: 746 agcaggaagatctagactaccagcaagcaatactacgtagaaacatggcacaacatccta 805
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1048 agcaggaagatctagactaccagcaagcaata-tacgtagaaacatggcacaacatccta 1106
Query: 806 aggttatttgtctttggtaatccattattggatatccaagttgacgttacagagtcctat 865
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 aggttatttgtc-ttggtaatccattattggatatccaagttgacgttacagagtcctat 1165
Query: 866 ttggcaaagtacggtttgaaaagcaacnacgcattcttgttagaagctggttctgttgat 925
|||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||| ||||
Sbjct: 1166 ttggcaaagtacggtttgaagagcaacgacgcaatcttggtagaagctggttctggtgat 1225
Query: 926 gctaaattggacattttcgattagatcgtcga 957
||||| ||| ||||||||||| ||||||||||
Sbjct: 1226 gctaagttgaacattttcgatgagatcgtcga 1257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6548
Number of Sequences: 1807
Number of extensions: 6548
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)