BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG09RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig394 1483 0.0
>3x_Contig394
Length = 1378
Score = 1483 bits (748), Expect = 0.0
Identities = 814/829 (98%), Gaps = 7/829 (0%)
Strand = Plus / Minus
Query: 48 cgtcacgttcctttggaaat-tacttccctgattatactgggggcaaagacatcaataaa 106
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cgtcacgttcctttggaaaagtacttccctgattatactgggggcaaagacatcaataaa 988
Query: 107 gctgccaaatatattctttggagatttgttcagttgaatagggccaatctcaacatatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gctgccaaatatattctttggagatttgttcagttgaatagggccaatctcaacatatat 928
Query: 167 cctcacgtcactcaagcgactgatacttcaaatatcaaactagtgtttgctgcaatcaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 cctcacgtcactcaagcgactgatacttcaaatatcaaactagtgtttgctgcaatcaag 868
Query: 227 gaaactatcttagaaaacagcttaaaagactctggtgttttgtagggaatgtgatagcgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaaactatcttagaaaacagcttaaaagactctggtgttttgtagggaatgtgatagcgg 808
Query: 287 cacatgaatactaaggataacaaattttatactaatgactttcaactttcaacttccaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cacatgaatactaaggataacaaattttatactaatgactttcaactttcaacttccaac 748
Query: 347 ttatcgaacagttttatgaggataatgaaatgtaagataatgtgatctatttcagtacta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttatcgaacagttttatgaggataatgaaatgtaagataatgtgatctatttcagtacta 688
Query: 407 ataatatcaacatcatgtaacgtgttatcaccgaagcctgtccttgttcatgaagtttag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ataatatcaacatcatgtaacgtgttatcaccgaagcctgtccttgttcatgaagtttag 628
Query: 467 tcgataacaagaatgatttttcctagtttgcaataatgtaaagtttttattaaatttcag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcgataacaagaatgatttttcctagtttgcaataatgtaaagtttttattaaatttcag 568
Query: 527 gcaaatttaaaatcgttttggactggatccaacatatgtttttagtccctattgagatat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaatttaaaatcgttttggactggatccaacatatgtttttagtccctattgagatat 508
Query: 587 ctctcttatcttgtatattgatttacggtataacgcaaaggttcaactctttccgttatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctctcttatcttgtatattgatttacggtataacgcaaaggttcaactctttccgttatg 448
Query: 647 taagttaaatataaaaactattcagttagatccgatagtaaccgtttagtggactatgag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taagttaaatataaaaactattcagttagatccgatagtaaccgtttagtggactatgag 388
Query: 707 aaataaatgaaggtcaagtattgngcccttgc-tttttttttactcagactt-aagtatg 764
|| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 387 aattaaatgaaggtcaagtattgggcccttgcttttttttttactcagacttaaagtatg 328
Query: 765 cantgtatatatatctatattttcgatatgttct-accttcacctcttt-atctgaagtc 822
|| ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct: 327 caatgtatatatatctatattttcgatatgttctaaccttcacctctttaatcggaagtc 268
Query: 823 cattttagcagcaa--tatcagcatattccggtgaaagatcgctttaaa 869
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 acatttagcagcaaattatcagcatattccggtgaaagatcgctttaaa 219
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7759
Number of Sequences: 1807
Number of extensions: 7759
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)