BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG10FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1562 0.0
>3x_Contig1739
Length = 22061
Score = 1562 bits (788), Expect = 0.0
Identities = 850/867 (98%), Gaps = 4/867 (0%)
Strand = Plus / Plus
Query: 87 tatgaaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcatta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10328 tatgaaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcatta 10387
Query: 147 cctcttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10388 cctcttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtac 10447
Query: 207 atgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgccacac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10448 atgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgccacac 10507
Query: 267 agtgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10508 agtgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttca 10567
Query: 327 ttgaaattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10568 ttgaaattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccaca 10627
Query: 387 tcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10628 tcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtatta 10687
Query: 447 attgcacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10688 attgcacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcat 10747
Query: 507 atatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10748 atatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatct 10807
Query: 567 ctggtgagtacagggattacagggtcctcatcagtattctttacactctccgaataatag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10808 ctggtgagtacagggattacagggtcctcatcagtattctttacactctccgaataatag 10867
Query: 627 ttgtaaactgacagtccggaggaacaacgcacttttagcataccttgatacccgactgtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10868 ttgtaaactgacagtccggaggaacaacgcacttttagcataccttgatacccgactgtg 10927
Query: 687 catttcacactcccttaaatgtcattaacaaatttgaattcatccttattgatgttgaaa 746
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10928 catttcacactccctaaaatgtcattaacaaatttgaattcatccttattgatgttgaaa 10987
Query: 747 ttcgaatagtggtgtagatgcccaga-gttgncattacaggnt-agatgttattgcaaga 804
|||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||
Sbjct: 10988 ttcgaatagtggtgtagatgcccagaggttgcaattacagggtaagatgttattgcaaga 11047
Query: 805 tcgatatatgctgttaaagtaacgaaaagatctattctncatcca-gacttcaagnaatc 863
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 11048 tcgatatatgctgtagaagtaacgaaaagatctattc-caatccaggacttcaagaaatc 11106
Query: 864 atgagctattttcttgtaaaactcatcttcacatctcaaatgctttttcaatccatcatc 923
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11107 atgagctaatttcttgtaaaactcatcttcacatctcaaatgctttttcaatccatcatc 11166
Query: 924 tctcattagaaacgnattaccacgacc 950
|||||||||| || ||||||||||||
Sbjct: 11167 tctcattagagacagattaccacgacc 11193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6460
Number of Sequences: 1807
Number of extensions: 6460
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)