BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG10RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig691 1618 0.0
>3x_Contig691
Length = 2698
Score = 1618 bits (816), Expect = 0.0
Identities = 899/918 (97%), Gaps = 8/918 (0%)
Strand = Plus / Minus
Query: 41 gcttgccgttatcctgatagtttttcaaagtggaggaaacgttcatcaagaccaagattg 100
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 968 gcttgccgttatcctgatagtttctcaaagtggaggaaacgttcatcaagaccaagattg 909
Query: 101 ggttacctgtggaattncacaccctcacataaatcagaagatacatagtattctgggaaa 160
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggttacctgtggaatt-cacaccctcacataaatcagaagatacatagtattctgggaaa 850
Query: 161 gtcaccggagtctttccatccttcaaagtagaaacatgaaccaagtcaccatacttatac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 849 gtcaccggagtctttccatccttcaaagtagaaacatgaaccaagtcaccatactta-ac 791
Query: 221 atcacctctagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatg 280
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aacacctctagcaacctcagcagcgtattcacgagttaggttgaactctttctccttatg 731
Query: 281 agaggactctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agaggactctctcaatttcttatcgcacccttcgcgtgcagaaacggaatctaaagctaa 671
Query: 341 agccaaagataacaacaaagtactacacttcatgactgaattattaatggctcaataact 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agccaaagataacaacaaagtactacacttcatgactgaattattaatggctcaataact 611
Query: 401 gatgtcgttatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gatgtcgttatttggataaacaatctctccgcaagttgtaacccctaagctcatcgctat 551
Query: 461 tcaatcttgatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtaca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaatcttgatagaaggttccttaaacctgtcgttgcctatatataaaataaacggtaca 491
Query: 521 aaatttataatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatttataatgcggtaaattacataatgcaaactaaggtaaggaaggtgctcagcctca 431
Query: 581 aacttccgaaaaagtagtttgtttaccagaagaaaacatttttgcagttcacccaagcct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aacttccgaaaaagtagtttgtttaccagaagaaaacatttttgcagttcacccaagcct 371
Query: 641 ttgcattgagattggttcggacgaaccatccgcctagatctcggatctaagtttaatcgc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgcattgagattggttcggacgaaccatccgcctagatctcggatctaagtttaatcgc 311
Query: 701 agagacatcgncgcataaccacatcgctccagccaggngnngnttttcttttgttcttat 760
|||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 310 agagacatcgccgcataaccacatcgctccagccaggtg-tgtttttcttttgttcttat 252
Query: 761 atgagccggtcctttgctg-aaagccagtctgaacgcaggcccaacgcacacaactcaca 819
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgagccggtcctttgctgaaaagccagtctgaacgcaggcccaacgcacacaactcaca 192
Query: 820 cacacccttcaatggaaacgttgaggcattgctaagtagatagctgctatgagccctgnt 879
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 191 cacaccctcaaatggaaacgttgaggcattgctaagtagatagctgctatgagccttg-t 133
Query: 880 ttatgccaaacatgcttatacggntggctgagatccgaaa-tcctca-naactagcca-t 936
||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
Sbjct: 132 ttatgccaaacatgcttatacggttggctgagatccgaaattcctcagaaactagccatt 73
Query: 937 acttgtagtgtgaccttg 954
||||||||||||||||||
Sbjct: 72 acttgtagtgtgaccttg 55
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5748
Number of Sequences: 1807
Number of extensions: 5748
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)