BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG12FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1745 1346 0.0
>3x_Contig1745
Length = 19830
Score = 1346 bits (679), Expect = 0.0
Identities = 736/751 (98%), Gaps = 3/751 (0%)
Strand = Plus / Plus
Query: 85 aataacctttatgaagcagtattactctcccaatgaactatttgttgatgcatgttgatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5387 aataacctttatgaagcagtattactctcccaatgaactatttgttgatgcatgttgatc 5446
Query: 145 aagtgttttatttatgctcctgtttttgtgctcttgttatcgtttttgtaattctcgatg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5447 aagtgttttatttatgctcctgtttttgtgctcttgttatcgtttttgtaattctcgatg 5506
Query: 205 tgttaatgtatttttttatcttttccgtaggtcctttatgtaatgtctagggaaatttgt 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5507 tgttaatgtatggcagtatcttttccgtaggtcctttatgtaatgtctagggaaatttgt 5566
Query: 265 ctgcaaatactgaatcggacaattactggatgctttctttctgctcttgccctgcttcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 ctgcaaatactgaatcggacaattactggatgctttctttctgctcttgccctgcttcct 5626
Query: 325 tttgtaagaaacagaaggactttctggtattcagaatatgatacgataatcgtgcttact 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 tttgtaagaaacagaaggactttctggtattcagaatatgatacgataatcgtgcttact 5686
Query: 385 agatgaatctcaacaaaatgagataatcgcttagatcgaccctgaaatcatgtcacaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 agatgaatctcaacaaaatgagataatcgcttagatcgaccctgaaatcatgtcacaaga 5746
Query: 445 aattccttgtaatgttcagctaatcgtgaatactgctagcaatgattccttcgagaaaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 aattccttgtaatgttcagctaatcgtgaatactgctagcaatgattccttcgagaaaaa 5806
Query: 505 aaaaaaaaaaagaattgccttgactcagattagtcgataacttatgctggcgaggtctac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 aaaaaaaaaaagaattgccttgactcagattagtcgataacttatgctggcgaggtctac 5866
Query: 565 agcaagtaagagatggtgaccaatacgtccagtctcatgcccgataatggagatatatgt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 agcaagtaagagatggtgaccaatacgtccagtctcatgcccgataatggagatatatgt 5926
Query: 625 agatgttcatgaaatgtcttatggcaaatatcagactggtgtaagacgttggtctacgca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 agatgttcatgaaatgtcttatggcaaatatcagactggtgtaagacgttggtctacgca 5986
Query: 685 cattgactgatttgtagaatctggacgtcatatttgagttaccgcataaagcatctgtta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 cattgactgatttgtagaatctggacgtcatatttgagttaccgcataaagcatctgtta 6046
Query: 745 tctgttatattatttcaaaaaaaa-tcatatttattgctcaa-gcatttaatgatccaga 802
|||||||||||||||||||||||| |||||| ||| |||||| ||||| |||||| ||||
Sbjct: 6047 tctgttatattatttcaaaaaaaactcatatgtatcgctcaaggcattaaatgatacaga 6106
Query: 803 cttccttgttgaaggtgaaga-gtatttctt 832
| | | ||||||||||||||| |||||||||
Sbjct: 6107 catacatgttgaaggtgaagaggtatttctt 6137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,951
Number of Sequences: 1807
Number of extensions: 17951
Number of successful extensions: 2583
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)