BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZG12RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1695 1594 0.0
>3x_Contig1695
Length = 14630
Score = 1594 bits (804), Expect = 0.0
Identities = 909/934 (97%), Gaps = 8/934 (0%)
Strand = Plus / Minus
Query: 38 aagcttattgccgaatcc-tcattttta-cttagaacc-tttagtt-acctcaaactggt 93
|||||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||||
Sbjct: 6105 aagcttattgccgaatccatcattcataacttagaaccatttagttcacctcaaactggt 6046
Query: 94 accat-atcgattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttctaca 152
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045 accatcatcgattgcaaggaaaaaatgaccaagaaatatatcgatgcgattggttctaca 5986
Query: 153 ttgattgatggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactctgttt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5985 ttgattgatggtgctgttaataagaaaaccaacgaaccgtggttcgtttatactccgatg 5926
Query: 213 cttggagtaggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaagaa 272
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5925 catggagtaggttttgagatttttgaaagtatcagtaaacaacttttatcccttgaagaa 5866
Query: 273 ggtaaagattacttagtagtagaagagcagaagtatccagatgctgatttccccacggtg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5865 ggtaaagattacttagtagtagaagagcagaagtatccagatgctgatttccccacggtg 5806
Query: 333 tctttccctaacccagaagaaaaaggtgctttggatctagccgttgaatatggaaggaag 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5805 tctttccctaacccagaagaaaaaggtgctttggatctagccgttgaatatggaaggaag 5746
Query: 393 aacgatactgtcgacctaattatagccaatgatccagatgccgataggtttagtgtcgca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5745 aacgatactgtcgacctaattatagccaatgatccagatgccgataggtttagtgtcgca 5686
Query: 453 gtaagggacaacgatcaaaatacaactacagcttggagacaattgaccggaaacgagatt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5685 gtaagggacaacgatcaaaatacaactacagcttggagacaattgaccggaaacgagatt 5626
Query: 513 ggattcttgtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaaccg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5625 ggattcttgtttgcatactatgaatgggaaaggtacaagcatagtcctatcgacgaaccg 5566
Query: 573 cttgcgatgttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaatagaa 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5565 cttgcgatgttgaactcaactgtttcttcacagatgatcaagcgtatggctgaaatagaa 5506
Query: 633 gggttccattacgaggatacgctaactgggttcaaatggcttggaaatcgcgcacttgag 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5505 gggttccattacgaggatacgctaactgggttcaaatggcttggaaatcgcgcacttgag 5446
Query: 693 ctagaacaagagggatactatacgccattcgcatacgaggaagctatagggtacatgttn 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5445 ctagaacaagagggatactatacgccattcgcatacgaggaagctatagggtacatgttt 5386
Query: 753 tcatctgtggttcacgacanagacggaatcagcgctgccatcgtctttctt-aagcctat 811
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5385 tcatctgtggttcacgacaaagacggaatcagcgctgccatcgtctttcttcaagcctat 5326
Query: 812 tcgaagtggcgtgcgagtggtcagactgtgctggatatttttgccacagcatcacttaag 871
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5325 tcgaagtggcgtgcgagtggtcagactgtgctggatattttggccacagcatcacttaag 5266
Query: 872 tacggccacttttaagagtttaacgggttatatatcgtccccggatcttgctataacgaa 931
|||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct: 5265 tacggccactttaaagagtttaacgggtattatatcgtcccc-gatctcgctataacgaa 5207
Query: 932 cagggtattcgatgccttcagaatctatcgagtc 965
||||||||||||| |||| ||||||||||||
Sbjct: 5206 gcaggtattcgatgccatcag-atctatcgagtc 5174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5877
Number of Sequences: 1807
Number of extensions: 5877
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)