BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH04FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1516 0.0
>3x_Contig1799
Length = 39855
Score = 1516 bits (765), Expect = 0.0
Identities = 828/845 (97%), Gaps = 3/845 (0%)
Strand = Plus / Minus
Query: 86 tccttcaaagtcttatatcatttctgagagtccatagaatgtaaaaaaaaattaataaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27239 tccttcaaagtcttatatcatttctgagagtccatagaatgtaaaaaaaaattaataaaa 27180
Query: 146 ggaaaaggaaaagggttaaaaagtcaagtggtatgagagtttttcatcagttgcgcttgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27179 ggaaaaggaaaagggttaaaaagtcaagtggtatgagagtttttcatcagttgcgcttgg 27120
Query: 206 ataattaaaatttgtacagcctctgatagccaggaaatgtgtaagagtcacagatctctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27119 ataattaaaatttgtacagcctctgatagccaggaaatgtgtaagagtcacagatctctg 27060
Query: 266 acatgtcgtatcggtagtaattgaattaaacttaaagtcaatttgtattgtatcctattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27059 acatgtcgtatcggtagtaattgaattaaacttaaagtcaatttgtattgtatcctattt 27000
Query: 326 ctatttcatttgagtttagtttagtttcgtctccgccctgcacgcttctttgatctttca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26999 ctatttcatttgagtttagtttagtttcgtctccgccctgcacgcttctttgatctttca 26940
Query: 386 attcaaccagagaatcgggagatcgacggccgatctacaattcgaacattttcgatgaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26939 attcaaccagagaatcgggagatcgacggccgatctacaattcgaacattttcgatgaca 26880
Query: 446 agtcatcaaggaaagagaaggtggatacagatatcttgaacagttgtttctagtgccact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26879 agtcatcaaggaaagagaaggtggatacagatatcttgaacagttgtttctagtgccact 26820
Query: 506 gaaccagtcaatttgagaataataagatccaggaaggaaagtagtagaaaaaaaggatgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26819 gaaccagtcaatttgagaataataagatccaggaaggaaagtagtagaaaaaaaggatgt 26760
Query: 566 aaaaaaacagttagctcacaacacgtagacaggcataaattaactgataacaacaacgaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26759 aaaaaaacagttagctcacaacacgtagacaggcataaattaactgataacaacaacgaa 26700
Query: 626 aatataacagaacaaaagtttgcttcaaagtagttaattagattcatatggttttcagct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26699 aatataacagaacaaaagtttgcttcaaagtagttaattagattcatatggttttcagct 26640
Query: 686 cttttcatgtctttctgtgccatttctttgaagtggtcagtgtttcacagaattccagtt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26639 cttttcatgtctttctgtgccatttctttgaagtggtcagtgtttcacagaattccagtt 26580
Query: 746 aagaaatcccttaagttcaaaactggccatgttgagaagtaacgccgttggagtattgtt 805
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 26579 aagaaatcccttaagttcaaaactggccatgttgagagttaacgccgttgaagtattgtt 26520
Query: 806 cgtaagctgcagcatggtcttggtttaaataa-aagcatt-gtgaaaattcgagtttggc 863
|||| || |||||||||||| ||||||||||| ||||||| |||||| | |||||||||
Sbjct: 26519 cgtaggcggcagcatggtctgggtttaaataagaagcattagtgaaattcggagtttggc 26460
Query: 864 ccgtgccctgaacttga-gttgctggtgctgtacggattggggttgttggtgctgctggg 922
||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 26459 ccgtgccttgaacctgaggttgctggtgctgtacggattggggttgttgttgctgttgtg 26400
Query: 923 aattt 927
|||||
Sbjct: 26399 aattt 26395
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8098
Number of Sequences: 1807
Number of extensions: 8098
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)