BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH04RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1661 0.0
>3x_Contig1798
Length = 38968
Score = 1661 bits (838), Expect = 0.0
Identities = 891/903 (98%), Gaps = 5/903 (0%)
Strand = Plus / Minus
Query: 49 agtgtagaagaaagaagaatata-gtagacttcggatcgcgatattacgttgtcgcttat 107
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 25586 agtgtagaagaaagaagaaaataagtagacttcggatcgcgatattacgttgtcgcttat 25527
Query: 108 cgattcttcaatataaaactttaggaaaaagtccaaaattgtatcatttatccaatcatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25526 cgattcttcaatataaaactttaggaaaaagtccaaaattgtatcatttatccaatcatt 25467
Query: 168 attgtacaaacatttgaagtcctggttagttaccgagagtttggaaccatcattgaaagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25466 attgtacaaacatttgaagtcctggttagttaccgagagtttggaaccatcattgaaagt 25407
Query: 228 ataagataaggtgggttcaaataactccgggttttcactttccatgagttcatcagatgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25406 ataagataaggtgggttcaaataactccgggttttcactttccatgagttcatcagatgt 25347
Query: 288 atgatgtacatcgccatgttttttgttatcagatatggaccttgtgacacgcctcaaatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25346 atgatgtacatcgccatgttttttgttatcagatatggaccttgtgacacgcctcaaatt 25287
Query: 348 agaaacgtaagaaatgaatggtggatgttcagtggttttttcagaggtagactgattccc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25286 agaaacgtaagaaatgaatggtggatgttcagtggttttttcagaggtagactgattccc 25227
Query: 408 atagaaactctcttgcgatactgtctcgtctggcgtttggttctgatatgaagtcagcgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25226 atagaaactctcttgcgatactgtctcgtctggcgtttggttctgatatgaagtcagcgg 25167
Query: 468 tttgtagtcgggaagctgtataactgtgccattcccagacccgcgtttgcctctatgtag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25166 tttgtagtcgggaagctgtataactgtgccattcccagacccgcgtttgcctctatgtag 25107
Query: 528 agagttcagtgacgagttggggcacttattgaagagtttatccgatttgtaccgatcagg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25106 agagttcagtgacgagttggggcacttattgaagagtttatccgatttgtaccgatcagg 25047
Query: 588 aaaaaggaccatttgatttgttccagtactaggagaagccttatattcattaagcattgc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25046 aaaaaggaccatttgatttgttccagtactaggagaagccttatattcattaagcattgc 24987
Query: 648 atcaatttcccttttcttgactttgaatattcggtctgacgatacatctacacccgtnaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24986 atcaatttcccttttcttgactttgaatattcggtctgacgatacatctacacccgtaaa 24927
Query: 708 acacatttctctttcaaaggcctccatgagctgtaaaaactttgcagactctgaagaact 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24926 acacatttctctttcaaaggcctccatgagctgtaaaaactttgcagactctgaagaact 24867
Query: 768 taatgaacccatccaagaaagacatctcgttttgattctatctacatttggcaac-agaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24866 taatgaacccatccaagaaagacatctcgttttgattctatctacatttggcaacaagaa 24807
Query: 827 ttgtttttcattggggaa-attacgccgaaaccttca-ctttgaagccataccaaaa-ct 883
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 24806 ttgtttttcattggggaatattacgccgaaaccttcacctttgaagccataccaaaacct 24747
Query: 884 nactgtttgatcaatttaagtaaacganaacccttgtatgggtttggacttcttcatgaa 943
|||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24746 cactgtttgatcatttaaggtaaacgagaacccttgtatgggtttggacttcttcatgaa 24687
Query: 944 ttg 946
|||
Sbjct: 24686 ttg 24684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7105
Number of Sequences: 1807
Number of extensions: 7105
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)