BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH05FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1665 0.0
>3x_Contig1697
Length = 16220
Score = 1665 bits (840), Expect = 0.0
Identities = 869/876 (99%), Gaps = 2/876 (0%)
Strand = Plus / Plus
Query: 85 ttaatgggaattaaaaaaacaccaaacgaaaacaaatagtagcgagcaacaaagagacag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 ttaatgggaattaaaaaaacaccaaacgaaaacaaatagtagcgagcaacaaagagacag 2579
Query: 145 atagtacttggtttctaccttgtttatgaggctggccaaaagataagatactattaagat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2580 atagtacttggtttctaccttgtttatgaggctggccaaaagataagatactattaagat 2639
Query: 205 ggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatataatatcaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2640 ggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatataatatcaca 2699
Query: 265 gtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgcttatat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2700 gtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgcttatat 2759
Query: 325 ttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatcctaatc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2760 ttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatcctaatc 2819
Query: 385 tcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttcttatc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2820 tcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttcttatc 2879
Query: 445 catgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccgacgaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2880 catgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccgacgaca 2939
Query: 505 tactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaaacaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2940 tactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaaacaaa 2999
Query: 565 agaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagcaatgtg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3000 agaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagcaatgtg 3059
Query: 625 gtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtcaacaa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 gtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtcaacaa 3119
Query: 685 agaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataaatacg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3120 agaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataaatacg 3179
Query: 745 tattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggcaagtct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 tattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggcaagtct 3239
Query: 805 caactctggcttttagctctctgtgatcttaactcagggtattaaccagagggaagaagt 864
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 3240 caactctggcttttagctctctgtgatcttaactcaggtaattaaccagagggaagagtt 3299
Query: 865 tgaatagagatgaaaaaggtggccaacttttgaagtaaaag-aaacagggtccacagtgg 923
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3300 tgaatagagatgaaaaaggtggccaacttttgaagtaaaagaaaacagggtccacagtgg 3359
Query: 924 gaga-tatctcctgaatgccttcttggggtttatac 958
|||| |||||||||||||||||| ||||||||||||
Sbjct: 3360 gagattatctcctgaatgccttcatggggtttatac 3395
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,035
Number of Sequences: 1807
Number of extensions: 10035
Number of successful extensions: 208
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)