BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH05RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1689 0.0
>3x_Contig1771
Length = 25932
Score = 1689 bits (852), Expect = 0.0
Identities = 904/915 (98%), Gaps = 5/915 (0%)
Strand = Plus / Plus
Query: 44 gctttagcgtcgtatttacaacataaaacatggcctgtagcgatagcgcaaactacaatt 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14515 gctttagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaatt 14574
Query: 104 ggctgctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatatt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14575 ggctgctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatatt 14634
Query: 164 ggagaacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcttattt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 14635 ggagaacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtattt 14694
Query: 224 ttacccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactagg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14695 ttacccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactagg 14754
Query: 284 ttttcaggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14755 ttttcaggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgc 14814
Query: 344 tcaagtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaacc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14815 tcaagtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaacc 14874
Query: 404 agaaatacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgagg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14875 agaaatacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgagg 14934
Query: 464 agatgttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14935 agatgttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgat 14994
Query: 524 cttttcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14995 cttttcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactg 15054
Query: 584 gttggaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15055 gttggaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtc 15114
Query: 644 ttctatatactgtaaaacgtccaatggtactaggaaattctgtagttgtgactcgggatc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15115 ttctatatactgtaaaacgtccaatggtactaggaaattctgtagttgtgactcgggatc 15174
Query: 704 gttagcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccat 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15175 gttagcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccat 15234
Query: 764 accttgcattgaatcttcagttcctgggaaatcatannacat-aacaccaagctcaatga 822
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 15235 accttgcattgaatcttcagttcctgggaaatcata-aacataaacaccaagctcaatga 15293
Query: 823 atgagtcaattatcgcagctaggcgttgttctgtctc-accaaatcggtttgcaaattct 881
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 15294 atgagtcaattatcgcagctaggcgttgttctgtctcaaccaaatcggtttgcaatttct 15353
Query: 882 ctaaagtttgctctaccatctcgtccgtatatctccgggattactctgt-agtgtacaga 940
|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 15354 ctaagttttgctctaccatctcgtccgtatatct-cgggattactctgtaagtgtacaga 15412
Query: 941 tgagctacctgtcct 955
|||||||||||||||
Sbjct: 15413 tgagctacctgtcct 15427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6408
Number of Sequences: 1807
Number of extensions: 6408
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)