BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC20ZH07RM1.SCF screened BAC_end
         (954 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1417                                                        1199   0.0  

>3x_Contig1417 
          Length = 10492

 Score = 1199 bits (605), Expect = 0.0
 Identities = 611/613 (99%)
 Strand = Plus / Plus

                                                                         
Query: 44    gcttctttgctaatggctcaaatgtgataatgttctcgagtacattgggatttacagtta 103
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9880  gcttctttgctaatggctcaaatgggataatgttctcgagtacattgggatttacagtta 9939

                                                                         
Query: 104   aacgagcatggtcgaaggttgattctccggaatcagacactataaccacattctttccat 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9940  aacgagcatggtcgaaggttgattctccggaatcagacactataaccacattctttccat 9999

                                                                         
Query: 164   ctttccccggtataactgattccactgcctcatgtttgacagagacatttggtaattctg 223
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10000 ctttccccggtataactgattccactgcctcatgtttgacagagacatttggtaatcctg 10059

                                                                         
Query: 224   taatatactcagataatgtcttcggataacaatccaatcctgatctgaatcccaccattg 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10060 taatatactcagataatgtcttcggataacaatccaatcctgatctgaatcccaccattg 10119

                                                                         
Query: 284   gaaaagccttcaatcgttgagacaaagaaattaactgtttctcactctggcctgtcgctt 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10120 gaaaagccttcaatcgttgagacaaagaaattaactgtttctcactctggcctgtcgctt 10179

                                                                         
Query: 344   ctgcaaactttttaagtaaaggactgatctctatcttgtgtgatctagtatcattacggt 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10180 ctgcaaactttttaagtaaaggactgatctctatcttgtgtgatctagtatcattacggt 10239

                                                                         
Query: 404   ttttatatttgataatcattttgttaaacattgatttgattagagatccagatgtgtttt 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10240 ttttatatttgataatcattttgttaaacattgatttgattagagatccagatgtgtttt 10299

                                                                         
Query: 464   ccatttcgaccatctttcctatcgttcgttttgcacttagttttttgatatccccagcat 523
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10300 ccatttcgaccatctttcctatcgttcgttttgcacttagttttttgatatccccagcat 10359

                                                                         
Query: 524   atatgccatggaataaagcactaaatacatttttgctgatatgttcattaccaaacctcc 583
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10360 atatgccatggaataaagcactaaatacatttttgctgatatgttcattaccaaacctcc 10419

                                                                         
Query: 584   tatggatgaaactgtgggcgctttcgtctgttccagttaccttagcggacctgaatggtt 643
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10420 tatggatgaaactgtgggcgctttcgtctgttccagttaccttagcggacctgaatggtt 10479

                          
Query: 644   cacctaagatacc 656
             |||||||||||||
Sbjct: 10480 cacctaagatacc 10492


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7131
Number of Sequences: 1807
Number of extensions: 7131
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)