BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH09RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1645 0.0
>3x_Contig1416
Length = 10161
Score = 1645 bits (830), Expect = 0.0
Identities = 894/910 (98%), Gaps = 4/910 (0%)
Strand = Plus / Plus
Query: 45 ctttttgaaaatttgttggaagtcttggacgcatgtggagaataaaattgcccttgattt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 ctttttgaaaatttgttggaagtcttggacgcatgtggagaataaaattgcccttgattt 1967
Query: 105 gagtttcttcgcagtgagaaagtctaagcgttgtttcaatgacataggtagtatactcat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1968 gagtttcttcgcagtgagaaagtctaagcgttgtttcaatgacataggtagtatactcat 2027
Query: 165 taccaagtccatcattgaaactaattcaaagcaggtgtcataattcctttcaagtttagt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2028 taccaagtccatcattgaaactaattcaaagcaggtgtcataattcctttcaagcacagt 2087
Query: 225 gagttgctctagataagccttcaataatttccaagacttgttaaagtgagacccatttaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 gagttgctctagataagccttcaataatttccaagacttgttaaagtgagacccatttaa 2147
Query: 285 ctgcatgaaaagagtgttcgctaagggagaaagatataagaccctagaatctatatcacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 ctgcatgaaaagagtgttcgctaagggagaaagatataagaccctagaatctatatcacc 2207
Query: 345 tgatctcttggatgctaatgagtattttgatttgaagtctttgattattttgtctgtgtc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 tgatctcttggatgctaatgagtattttgatttgaagtctttgattattttgtctgtgtc 2267
Query: 405 gtaaaatatcttcacgaaactcaaaatgcttttgttaatgcttttatgatcccaggtccg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 gtaaaatatcttcacgaaactcaaaatgcttttgttaatgcttttatgatcccaggtccg 2327
Query: 465 tagttctgagcgatcgtcaatttctaggatgctggatttccataaactatgttgcatatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 tagttctgagcgatcgtcaatttctaggatgctggatttccataaactatgttgcatatt 2387
Query: 525 caatagaggttgtttgttttcaactcttgcgactgatttgaacgtaattgtaatggtgtc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 caatagaggttgtttgttttcaactcttgcgactgatttgaacgtaattgtaatggtgtc 2447
Query: 585 atcttccacctgaattgcagttattcttgaagcagctccaacagagttattcacggcttc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 atcttccacctgaattgcagttattcttgaagcagctccaacagagttattcacggcttc 2507
Query: 645 aaagggtaaaagaactatgtacatctgaacttctgcgtcattattgctattatcagagcc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 aaagggtaaaagaactatgtacatctgaacttctgcgtcattattgctattatcagagcc 2567
Query: 705 gtacttcttatggaactgtttgcatgaattcacaactgaattatcgactactatttcgtt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 gtacttcttatggaactgtttgcatgaattcacaactgaattatcgactactatttcgtt 2627
Query: 765 ctgagcaatagccgtgttgattttgtccaatagatgattattcttgaatgaattatttcg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2628 ctgagcaatagccgtgttgattttgtccaatagatgattattcttgaatgaattatttcg 2687
Query: 825 tttgaactcagatagcacatgttatatagaatctctctcaaatgtaacctttgtacgata 884
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 2688 tttgaactcagatagcacatgtataatagaatctctctcaaatgaaacc-ttgtacgata 2746
Query: 885 caccaggtagtgtggacaagctttagtgcgttaacaagttgtaaagc-aggcaaattcag 943
|||||||||||| |||||||||| |||||| |||||| |||||||| |||||||| ||
Sbjct: 2747 caccaggtagtg-ggacaagcttaggtgcgtcaacaag-tgtaaagcaaggcaaatacaa 2804
Query: 944 gtttgagccc 953
||||||||||
Sbjct: 2805 gtttgagccc 2814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7690
Number of Sequences: 1807
Number of extensions: 7690
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)