BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH10FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1674 1598 0.0
>3x_Contig1674
Length = 12281
Score = 1598 bits (806), Expect = 0.0
Identities = 860/874 (98%), Gaps = 3/874 (0%)
Strand = Plus / Minus
Query: 86 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9312 cttcatcctcaagaagcatagtttggaagtatctgagagtggtgatgaactagagaatga 9253
Query: 146 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252 aacacccaagaaaaagaagggatgctgtggtggtaagaatggtggatgttccagtaagaa 9193
Query: 206 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9192 actggacgaatttggcatgccagtgaagaagaacaagggatgctgtgggggtgcgtgtaa 9133
Query: 266 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9132 atccaagaaggcgcaagatcctgcacctgtggtagaagttggttacgataacgaaataga 9073
Query: 326 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9072 tttcactgattcttttaaaaattgatatcaccatctttagttgttgtatcaatcaataag 9013
Query: 386 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9012 gggaggtggagcctcacatatttcgggggaaaaaaaagaggacgtgacgtctggccactt 8953
Query: 446 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8952 caataattcggtaaaagcagtaatcttagaactcatattcaaaattcagggacacatagg 8893
Query: 506 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8892 gtactttcaatattgtcttatttatttgttaactaattaattgtcatttcatttttaatt 8833
Query: 566 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8832 actgttattttagttgtgccggatctgttcaaacctatgcattctttatcaacatattgt 8773
Query: 626 gcatatacgagacatctataattctgtatagctgtggcctgtgttccgtaatattcgcag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8772 gcatatacgagacatctataattctgtatagctgtggcctgtgttccgtaatattcgcag 8713
Query: 686 gagcgcatcaatatggcttaaaaagattgaatatcgaaaacgaactcgatttattcgttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8712 gagcgcatcaatatggcttaaaaagattgaatatcgaaaacgaactcgatttattcgttt 8653
Query: 746 ccactgaaggctttttgcggattaactgtttttcaaatttcgttttgaatagttcctcta 805
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8652 ccactgaaggctttttgcggattaactgtttttcaaattccgttttgaatagttcctcta 8593
Query: 806 gatcgacacctttccttgctcgttctagctcacggtcttcaacgagataaaacttcttga 865
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 8592 gatcgacacctttccttgctcgttctagctcacggtcttcaacgagataaagcttc-tga 8534
Query: 866 gttggtaaggggctttgtaagttataactcctttagctgcttatgagtctttggtatatt 925
|||||||| ||| ||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct: 8533 gttggtaaaggggcttgtaagttataactccttaagctgctattgagtc-ttggtatatt 8475
Query: 926 tgtattcaaaaaacttttggttgaccggggccca 959
|| ||||||||||||||||| || |||||||||
Sbjct: 8474 tgatttcaaaaaacttttggtgga-cggggccca 8442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7690
Number of Sequences: 1807
Number of extensions: 7690
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)