BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC20ZH10RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1667 0.0
>3x_Contig1777
Length = 26319
Score = 1667 bits (841), Expect = 0.0
Identities = 893/908 (98%), Gaps = 2/908 (0%)
Strand = Plus / Plus
Query: 46 aaggtactggagagatctgttggtgctgcacggttcccaccgaaacacttttcaaatatt 105
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 25065 aaggtactggagagatctgcaggtgctgcacggttcccaccgaaacacttttcaaatatt 25124
Query: 106 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25125 ccggttgctttgataccttttttaattctaccctttctcccagtagtaagttaccaacac 25184
Query: 166 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatcttccttgttggccc 225
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 25185 tacgcaaagccttgcctactttgatgacattggtttgtgaggaatcgtccttgagggccc 25244
Query: 226 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25245 tactaatacctacgatacctttttctccctcccttgaaatcatacaaaagttatcattct 25304
Query: 286 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25305 tcaattcaagatatttcattacctctgcattaatctctatgaccccttgaccattatcgg 25364
Query: 346 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25365 cattgttgtcaattggacgtacaatgaattgttgtggtagtttgaacttggtctttgttt 25424
Query: 406 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25425 cctcagatgcaccagaagatacaccagttttcttcttactgttagaagagttacttttag 25484
Query: 466 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25485 tagccatgcttcctctttgaatggatcttaaagggcccgtacctatccttctattgttta 25544
Query: 526 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545 tttgcttcaggtaatgtctctttaaatgaataagatgagaactgcgatgagatgagatga 25604
Query: 586 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatacgcag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25605 gcttcgaactttttcctttcaatattgaaaaagttcgaaatgtagaatttgaatacgcag 25664
Query: 646 atgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacactgtga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25665 atgcattcacaagttataagggaagtccaattcaaaaacagcagttgcaagacactgtga 25724
Query: 706 gcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataaatca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25725 gcgatgattaggcggccagcagtagctactttatcatgtatgagatcgttgtataaatca 25784
Query: 766 gttacaaacctgactggacttncacaaagaaattgggttcaagattattaaagaataaag 825
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 25785 gttacaaacctgactggacttccacaaagaaatcgggttcaagattataaaagaataaag 25844
Query: 826 cgtatattgcaggctttacacacgaataaatacgatgatttgaaggtaccgtttattgac 885
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 25845 cgtatattgcaggctttacacacgaataaatacgatgatatgaaggtaccgtctattgac 25904
Query: 886 ccattaattaagtgtttatatgtgtacaaaaacacttaaggt-agtgtgggtgtaaataa 944
| |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 25905 caattaattaagtgtttatatgtg-acaaaaccacttaaggtaagtgtgggtgtaaataa 25963
Query: 945 ggaagttg 952
|||||||
Sbjct: 25964 agaagttg 25971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8287
Number of Sequences: 1807
Number of extensions: 8287
Number of successful extensions: 320
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)